Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   IMZ18_RS21125 Genome accession   NZ_CP063151
Coordinates   3984469..3984810 (+) Length   113 a.a.
NCBI ID   WP_014481141.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3979469..3989810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS21085 (IMZ18_21085) rapD 3979600..3980664 (-) 1065 WP_014481149.1 aspartate phosphatase RapD -
  IMZ18_RS21090 (IMZ18_21090) fabZ 3980856..3981281 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IMZ18_RS21095 (IMZ18_21095) mscL 3981354..3981749 (+) 396 WP_072592613.1 large conductance mechanosensitive channel protein MscL -
  IMZ18_RS21100 (IMZ18_21100) ywpD 3981797..3982633 (-) 837 WP_014481147.1 histidine kinase -
  IMZ18_RS21105 (IMZ18_21105) - 3982562..3982906 (+) 345 WP_103330051.1 prealbumin-like fold domain-containing protein -
  IMZ18_RS21110 (IMZ18_21110) - 3982893..3983285 (+) 393 Protein_4143 class A sortase -
  IMZ18_RS21115 (IMZ18_21115) ywpF 3983425..3983835 (-) 411 WP_014481144.1 YwpF-like family protein -
  IMZ18_RS21120 (IMZ18_21120) ywpG 3984010..3984392 (+) 383 Protein_4145 DynA interaction protein YwpG -
  IMZ18_RS21125 (IMZ18_21125) ssbB 3984469..3984810 (+) 342 WP_014481141.1 single-stranded DNA-binding protein SsbB Machinery gene
  IMZ18_RS21130 (IMZ18_21130) glcR 3985034..3985810 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  IMZ18_RS21135 (IMZ18_21135) ywpJ 3985816..3986673 (+) 858 WP_014481140.1 phosphatase YwpJ -
  IMZ18_RS21140 (IMZ18_21140) hepAB 3986799..3989567 (-) 2769 WP_014481139.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12550.17 Da        Isoelectric Point: 6.9498

>NTDB_id=493509 IMZ18_RS21125 WP_014481141.1 3984469..3984810(+) (ssbB) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MFNQVMLVGRLTKDPDLRYTSTGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=493509 IMZ18_RS21125 WP_014481141.1 3984469..3984810(+) (ssbB) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCACCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389