Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   IMY14_RS19405 Genome accession   NZ_CP063150
Coordinates   3736200..3736541 (-) Length   113 a.a.
NCBI ID   WP_015384858.1    Uniprot ID   -
Organism   Bacillus subtilis strain s-16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3731200..3741541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS19390 hepAB 3731442..3734210 (+) 2769 WP_047183317.1 DEAD/DEAH box helicase -
  IMY14_RS19395 ywpJ 3734336..3735193 (-) 858 WP_015384856.1 phosphatase YwpJ -
  IMY14_RS19400 glcR 3735199..3735975 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  IMY14_RS19405 ssbB 3736200..3736541 (-) 342 WP_015384858.1 single-stranded DNA-binding protein SsbB Machinery gene
  IMY14_RS19410 ywpG 3736618..3737001 (-) 384 WP_003227796.1 DynA interaction protein YwpG -
  IMY14_RS19415 ywpF 3737176..3737586 (+) 411 WP_003227794.1 YwpF-like family protein -
  IMY14_RS19420 - 3737711..3738349 (-) 639 WP_047183318.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12476.14 Da        Isoelectric Point: 7.8150

>NTDB_id=493428 IMY14_RS19405 WP_015384858.1 3736200..3736541(-) (ssbB) [Bacillus subtilis strain s-16]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLIGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=493428 IMY14_RS19405 WP_015384858.1 3736200..3736541(-) (ssbB) [Bacillus subtilis strain s-16]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCATCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

45.37

95.575

0.434
  ssbA Streptococcus mutans UA159

45.283

93.805

0.425
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae D39

44.444

95.575

0.425
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

92.92

0.398