Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA/cilD   Type   Machinery gene
Locus tag   SPNOXC_RS09965 Genome accession   NC_017592
Coordinates   1834881..1835822 (-) Length   313 a.a.
NCBI ID   WP_000249552.1    Uniprot ID   -
Organism   Streptococcus pneumoniae OXC141     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829881..1840822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPNOXC_RS09920 (SPNOXC18010) comYH 1830367..1831320 (-) 954 WP_000345099.1 class I SAM-dependent methyltransferase Machinery gene
  SPNOXC_RS12020 (SPNOXC18020) - 1831381..1831975 (-) 595 Protein_1876 methyltransferase domain-containing protein -
  SPNOXC_RS09935 (SPNOXC18030) comGG/cglG 1832112..1832525 (-) 414 WP_000265624.1 competence type IV pilus minor pilin ComGG Machinery gene
  SPNOXC_RS09940 (SPNOXC18040) comGF/cglF 1832503..1832964 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPNOXC_RS09945 (SPNOXC18050) comGE/cglE 1832927..1833229 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPNOXC_RS09950 (SPNOXC18060) comGD/cglD 1833192..1833596 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPNOXC_RS09955 (SPNOXC18070) comGC/cglC 1833589..1833915 (-) 327 WP_000738636.1 comG operon protein ComGC Machinery gene
  SPNOXC_RS09960 (SPNOXC18080) comGB/cglB 1833917..1834933 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPNOXC_RS09965 (SPNOXC18090) comGA/cglA/cilD 1834881..1835822 (-) 942 WP_000249552.1 competence type IV pilus ATPase ComGA Machinery gene
  SPNOXC_RS09970 (SPNOXC18100) - 1835898..1836263 (-) 366 WP_000286415.1 DUF1033 family protein -
  SPNOXC_RS09975 (SPNOXC18110) - 1836414..1837472 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  SPNOXC_RS09980 (SPNOXC18120) nagA 1837635..1838786 (-) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -
  SPNOXC_RS09985 (SPNOXC18130) - 1838939..1840756 (-) 1818 WP_001220922.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35587.57 Da        Isoelectric Point: 6.0083

>NTDB_id=49274 SPNOXC_RS09965 WP_000249552.1 1834881..1835822(-) (comGA/cglA/cilD) [Streptococcus pneumoniae OXC141]
MVQEIAQEIIRSARKKGAQDIYFVPKLDAYELHMRVGDERCKIGSYDFEKFAAVISHFKFVAGMNVGEKRRSQLGSCDYA
YDQKMASLRLSTVGDYRGHESLVIRLLHDEEQDLHFWFQDIEELGKQYRQRGLYLFAGPVGSGKTTLMHELSKSLFKGQQ
VMSIEDPVEIKQDDMLQLQLNEAIGLTYENLIKLSLRHRPDLLIIGEIRDIETARAVVRASLTGATVFSTIHAKSIRGVY
ERLLELGVSEEELAVVLQGVCYQRLIGGGGIVDFANRDYQEHQAAKWNEQIDQLLKDGHITSLQAETEKISYS

Nucleotide


Download         Length: 942 bp        

>NTDB_id=49274 SPNOXC_RS09965 WP_000249552.1 1834881..1835822(-) (comGA/cglA/cilD) [Streptococcus pneumoniae OXC141]
ATGGTTCAAGAAATTGCACAAGAAATCATTCGCTCGGCTCGGAAAAAAGGGGCGCAAGACATTTATTTTGTCCCCAAGTT
AGACGCCTATGAGCTTCATATGAGGGTAGGAGACGAGCGCTGTAAAATTGGTAGCTATGATTTTGAAAAGTTTGCAGCCG
TTATCAGTCACTTTAAGTTTGTGGCGGGTATGAATGTGGGAGAAAAAAGACGTAGTCAACTGGGTTCCTGTGATTATGCC
TATGACCAGAAGATGGCGTCTCTACGTTTATCTACTGTAGGCGATTATCGGGGGCATGAGAGTTTGGTTATCCGTTTGTT
GCACGATGAGGAGCAGGACTTGCATTTTTGGTTTCAGGATATTGAAGAATTAGGCAAGCAGTACAGGCAACGGGGACTCT
ATCTTTTTGCTGGTCCGGTTGGGAGTGGTAAGACGACCTTGATGCATGAATTGTCCAAGTCACTCTTTAAAGGACAGCAA
GTTATGTCCATCGAAGATCCTGTCGAAATCAAGCAGGACGACATGCTTCAGTTGCAGTTGAACGAAGCAATCGGTCTAAC
CTATGAAAATCTAATCAAACTTTCCTTGCGTCATCGACCAGATCTCTTGATTATCGGAGAAATTCGTGACATCGAGACGG
CGCGTGCAGTGGTCAGAGCTAGTTTGACAGGTGCGACAGTCTTTTCAACCATTCACGCCAAGAGTATCCGAGGTGTTTAT
GAGCGTCTGCTGGAGTTGGGTGTGAGTGAAGAAGAATTGGCAGTTGTTCTGCAAGGAGTCTGCTACCAGAGATTAATCGG
GGGAGGAGGAATCGTTGACTTTGCAAACAGAGATTATCAAGAACACCAAGCAGCCAAGTGGAATGAGCAAATTGACCAGC
TTCTTAAAGATGGACATATCACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

98.403

100

0.984
  comGA/cglA/cilD Streptococcus pneumoniae D39

98.403

100

0.984
  comGA/cglA/cilD Streptococcus pneumoniae R6

98.403

100

0.984
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

98.403

100

0.984
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

96.805

100

0.968
  comYA Streptococcus gordonii str. Challis substr. CH1

77.742

99.042

0.77
  comYA Streptococcus mutans UA159

66.238

99.361

0.658
  comYA Streptococcus mutans UA140

66.238

99.361

0.658
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

62.903

99.042

0.623
  comGA Lactococcus lactis subsp. cremoris KW2

55.128

99.681

0.55
  comGA Latilactobacillus sakei subsp. sakei 23K

41.912

86.901

0.364

Multiple sequence alignment