Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   SPNOXC_RS09935 Genome accession   NC_017592
Coordinates   1832112..1832525 (-) Length   137 a.a.
NCBI ID   WP_000265624.1    Uniprot ID   -
Organism   Streptococcus pneumoniae OXC141     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1827112..1837525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPNOXC_RS09905 (SPNOXC17980) - 1827807..1828631 (-) 825 WP_001809383.1 membrane protein insertase YidC -
  SPNOXC_RS09910 (SPNOXC17990) rnpA 1828606..1828977 (-) 372 WP_000739244.1 ribonuclease P protein component -
  SPNOXC_RS13370 - 1828994..1829125 (-) 132 WP_000768904.1 hypothetical protein -
  SPNOXC_RS09915 (SPNOXC18000) - 1829126..1830316 (-) 1191 WP_000167765.1 acetate kinase -
  SPNOXC_RS09920 (SPNOXC18010) comYH 1830367..1831320 (-) 954 WP_000345099.1 class I SAM-dependent methyltransferase Machinery gene
  SPNOXC_RS12020 (SPNOXC18020) - 1831381..1831975 (-) 595 Protein_1876 methyltransferase domain-containing protein -
  SPNOXC_RS09935 (SPNOXC18030) comGG/cglG 1832112..1832525 (-) 414 WP_000265624.1 competence type IV pilus minor pilin ComGG Machinery gene
  SPNOXC_RS09940 (SPNOXC18040) comGF/cglF 1832503..1832964 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPNOXC_RS09945 (SPNOXC18050) comGE/cglE 1832927..1833229 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPNOXC_RS09950 (SPNOXC18060) comGD/cglD 1833192..1833596 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPNOXC_RS09955 (SPNOXC18070) comGC/cglC 1833589..1833915 (-) 327 WP_000738636.1 comG operon protein ComGC Machinery gene
  SPNOXC_RS09960 (SPNOXC18080) comGB/cglB 1833917..1834933 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPNOXC_RS09965 (SPNOXC18090) comGA/cglA/cilD 1834881..1835822 (-) 942 WP_000249552.1 competence type IV pilus ATPase ComGA Machinery gene
  SPNOXC_RS09970 (SPNOXC18100) - 1835898..1836263 (-) 366 WP_000286415.1 DUF1033 family protein -
  SPNOXC_RS09975 (SPNOXC18110) - 1836414..1837472 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15955.42 Da        Isoelectric Point: 10.2472

>NTDB_id=49268 SPNOXC_RS09935 WP_000265624.1 1832112..1832525(-) (comGG/cglG) [Streptococcus pneumoniae OXC141]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKVEQESGEQVFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=49268 SPNOXC_RS09935 WP_000265624.1 1832112..1832525(-) (comGG/cglG) [Streptococcus pneumoniae OXC141]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGGCTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae D39

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae R6

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae TIGR4

99.27

100

0.993

  comGG/cglG Streptococcus mitis SK321

87.591

100

0.876

  comGG/cglG Streptococcus mitis NCTC 12261

89.256

88.321

0.788

  comYG Streptococcus mutans UA140

38.806

97.81

0.38

  comYG Streptococcus mutans UA159

38.806

97.81

0.38


Multiple sequence alignment