Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   M062_RS16760 Genome accession   NC_021577
Coordinates   3609792..3610121 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa RP73     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3604792..3615121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M062_RS16745 (M062_16785) uvrB 3606179..3608191 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  M062_RS16750 (M062_16790) - 3608379..3609575 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  M062_RS16760 (M062_16800) comEA/comE1 3609792..3610121 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  M062_RS16765 (M062_16805) - 3610312..3612309 (-) 1998 WP_003143571.1 polysaccharide biosynthesis protein -
  M062_RS16770 (M062_16810) - 3612404..3613432 (-) 1029 WP_003116434.1 MraY family glycosyltransferase -
  M062_RS16775 (M062_16815) - 3613625..3614830 (-) 1206 WP_023102972.1 DegT/DnrJ/EryC1/StrS family aminotransferase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=49272 M062_RS16760 WP_003104586.1 3609792..3610121(-) (comEA/comE1) [Pseudomonas aeruginosa RP73]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=49272 M062_RS16760 WP_003104586.1 3609792..3610121(-) (comEA/comE1) [Pseudomonas aeruginosa RP73]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment