Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   IIE26_RS20145 Genome accession   NZ_CP062790
Coordinates   4056704..4057072 (-) Length   122 a.a.
NCBI ID   WP_009332165.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain YPW-V2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4051704..4062072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IIE26_RS20130 (IIE26_20130) - 4053079..4055898 (+) 2820 WP_009332162.1 DEAD/DEAH box helicase -
  IIE26_RS20135 (IIE26_20135) - 4055906..4056292 (-) 387 WP_009332163.1 hypothetical protein -
  IIE26_RS20140 (IIE26_20140) - 4056516..4056698 (-) 183 WP_226280796.1 hypothetical protein -
  IIE26_RS20145 (IIE26_20145) ssbB 4056704..4057072 (-) 369 WP_009332165.1 single-stranded DNA-binding protein Machinery gene
  IIE26_RS20150 (IIE26_20150) - 4057341..4057799 (+) 459 WP_009332166.1 YwpF-like family protein -
  IIE26_RS20155 (IIE26_20155) - 4057849..4058166 (-) 318 WP_009332167.1 hypothetical protein -
  IIE26_RS20160 (IIE26_20160) fabZ 4058304..4058732 (-) 429 WP_009332168.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IIE26_RS20165 (IIE26_20165) - 4058861..4059130 (-) 270 WP_009332169.1 DNA-directed RNA polymerase subunit beta -
  IIE26_RS20170 (IIE26_20170) - 4059148..4059975 (-) 828 WP_009332170.1 flagellar hook-basal body protein -
  IIE26_RS20175 (IIE26_20175) - 4060010..4060849 (-) 840 WP_009332171.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 14218.24 Da        Isoelectric Point: 9.7599

>NTDB_id=491410 IIE26_RS20145 WP_009332165.1 4056704..4057072(-) (ssbB) [Cytobacillus oceanisediminis strain YPW-V2]
MINQVTLVGRLTRDPELKRTQEGIPVTNVTLAVNRQYRNQKGEIDADFVQCTLWKKTAENTSQYCRKGTLIGITGRIQTR
HYDNQEKKRIYVTEVVAESVRFLDRKKTEEFPVTVTKEELPF

Nucleotide


Download         Length: 369 bp        

>NTDB_id=491410 IIE26_RS20145 WP_009332165.1 4056704..4057072(-) (ssbB) [Cytobacillus oceanisediminis strain YPW-V2]
ATGATTAATCAAGTGACCCTGGTTGGAAGACTGACAAGGGATCCCGAGCTGAAACGGACACAGGAAGGCATTCCGGTGAC
AAATGTGACGTTGGCAGTAAACCGCCAATACCGCAATCAGAAGGGTGAAATCGATGCGGATTTTGTACAATGCACCTTAT
GGAAGAAAACGGCGGAAAATACATCCCAGTATTGCCGGAAGGGCACCTTGATTGGGATAACCGGGAGAATTCAGACGAGG
CATTATGATAATCAGGAAAAGAAACGCATTTATGTAACAGAAGTGGTAGCGGAATCGGTCCGCTTTCTTGACCGGAAGAA
GACAGAAGAATTCCCGGTGACCGTGACCAAGGAGGAACTGCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.909

90.164

0.549
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.206

87.705

0.475
  ssb Latilactobacillus sakei subsp. sakei 23K

49.091

90.164

0.443
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.394

100

0.426
  ssbA Streptococcus mutans UA159

37.879

100

0.41
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.121

100

0.402
  ssbB/cilA Streptococcus mitis NCTC 12261

37.121

100

0.402
  ssbB/cilA Streptococcus pneumoniae Rx1

36.364

100

0.393
  ssbB/cilA Streptococcus pneumoniae D39

36.364

100

0.393
  ssbB/cilA Streptococcus pneumoniae R6

36.364

100

0.393
  ssbB/cilA Streptococcus mitis SK321

36.364

100

0.393
  ssbB Lactococcus lactis subsp. cremoris KW2

41.121

87.705

0.361