Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IHV80_RS16115 Genome accession   NZ_CP062500
Coordinates   3585812..3586924 (-) Length   370 a.a.
NCBI ID   WP_192889633.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3580812..3591924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS16085 hemF 3581334..3582251 (-) 918 WP_192889629.1 oxygen-dependent coproporphyrinogen oxidase -
  IHV80_RS16090 - 3582271..3582828 (-) 558 WP_192889630.1 L-threonylcarbamoyladenylate synthase -
  IHV80_RS16095 purE 3583024..3583509 (+) 486 WP_192889631.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IHV80_RS16100 - 3583515..3584645 (+) 1131 WP_192889632.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IHV80_RS16105 - 3584750..3585319 (-) 570 WP_004735775.1 type I DNA topoisomerase -
  IHV80_RS16110 - 3585332..3585808 (-) 477 WP_009848094.1 DUF494 family protein -
  IHV80_RS16115 dprA 3585812..3586924 (-) 1113 WP_192889633.1 DNA-processing protein DprA Machinery gene
  IHV80_RS16120 - 3586921..3588012 (-) 1092 WP_192889634.1 LysM peptidoglycan-binding domain-containing protein -
  IHV80_RS16125 def 3588153..3588665 (+) 513 WP_004735769.1 peptide deformylase -
  IHV80_RS16130 fmt 3588704..3589669 (+) 966 WP_192889635.1 methionyl-tRNA formyltransferase -
  IHV80_RS16135 rsmB 3589789..3591069 (+) 1281 WP_017099685.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40103.83 Da        Isoelectric Point: 7.2725

>NTDB_id=490527 IHV80_RS16115 WP_192889633.1 3585812..3586924(-) (dprA) [Vibrio bathopelagicus strain Sal10]
MNEQQLSAWLTLSFVPQLGSKRLSRLLSIDPPSNIVGYSSQQLQALGLSAKQISYLREQAPREVEACLAWQARQPNHHII
TPNCPHYPKLLNETASAPSALFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSPTSRGGNSLIKSGACLVQNAQDVLIEIKSLLDWSIDQQPSLFEPTPNKGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=490527 IHV80_RS16115 WP_192889633.1 3585812..3586924(-) (dprA) [Vibrio bathopelagicus strain Sal10]
GTGAATGAGCAGCAACTGAGCGCCTGGCTAACTCTAAGTTTTGTTCCGCAATTGGGTAGCAAGCGCCTTTCTCGTTTGCT
GAGTATTGATCCTCCTTCTAATATTGTTGGCTACTCAAGTCAGCAGCTACAAGCACTTGGTTTGTCTGCCAAGCAAATTT
CCTATCTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCTTAGCGTGGCAAGCAAGGCAGCCCAACCATCACATCATT
ACCCCTAACTGCCCACATTATCCCAAACTGCTGAACGAGACAGCTTCTGCGCCAAGTGCTCTTTTCGTTAAAGGTCATGT
TGAAAAACTGATTGAGCCTCAAATCGCTATGGTTGGCAGTCGTAATGCCAGTCTCGAAGGACTACAGACAGCGAAGTCCT
TCGCTAAAGAGTTTGTACAAAATGGCTTGATCGTCACGAGTGGTTTAGCGTTAGGCATTGATGGCTATGCTCATGATGGT
GCTTTGGATAAAGGAGGGGAGACCTTCGCAGTGTTGGGCTCTGGCTTAGATTCCATTTACCCTGCGCGGCATAGAAACTT
AGCCGATAGAATTTGTGAGAATGGTGCGCTAATTTCAGAGTTTCGACCAAGTGCTAAACCAAGACCTGAACATTTCCCCC
GACGTAATCGTATTATTAGTGGCTTGTCGCTAGGAACCTTAGTGGTTGAAGCGGCTGAGAAGAGTGGCTCTTTGATTACG
GCTCGCTATGCCATGGAGCAAGGCCGAGAGGTGTTTGCACTTCCTGGCTCAATTCATAGTCCAACCAGTCGCGGAGGTAA
CAGCTTAATTAAATCTGGTGCATGTTTGGTGCAAAATGCTCAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATAGATCAGCAGCCCAGTTTGTTCGAGCCTACGCCGAATAAGGGTGAAAATGAGCAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.022

99.73

0.678
  dprA Vibrio cholerae strain A1552

58.021

100

0.586
  dprA Glaesserella parasuis strain SC1401

47.312

100

0.476
  dprA Legionella pneumophila strain ERS1305867

43.956

98.378

0.432
  dprA Haemophilus influenzae Rd KW20

44.51

91.081

0.405
  dprA Neisseria meningitidis strain C311

37.783

100

0.405
  dprA Neisseria meningitidis MC58

37.783

100

0.405
  dprA Neisseria gonorrhoeae strain FA1090

36.709

100

0.392
  dprA Neisseria gonorrhoeae MS11

36.709

100

0.392
  dprA Acinetobacter baumannii strain A118

42.553

88.919

0.378
  dprA Acinetobacter baumannii D1279779

42.073

88.649

0.373
  dprA Acinetobacter baylyi ADP1

40.896

90.541

0.37