Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IHV80_RS14910 Genome accession   NZ_CP062500
Coordinates   3322835..3324529 (-) Length   564 a.a.
NCBI ID   WP_192889510.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3317835..3329529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS14890 - 3318512..3319360 (-) 849 WP_017104652.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  IHV80_RS14895 - 3319430..3320947 (-) 1518 WP_192889508.1 SPOR domain-containing protein -
  IHV80_RS14900 aroB 3321026..3322114 (-) 1089 WP_017104650.1 3-dehydroquinate synthase -
  IHV80_RS14905 aroK 3322140..3322658 (-) 519 WP_192889509.1 shikimate kinase AroK -
  IHV80_RS14910 pilQ 3322835..3324529 (-) 1695 WP_192889510.1 type IV pilus secretin PilQ Machinery gene
  IHV80_RS14915 pilP 3324589..3325107 (-) 519 WP_192889511.1 pilus assembly protein PilP Machinery gene
  IHV80_RS14920 pilO 3325094..3325705 (-) 612 WP_192889512.1 type 4a pilus biogenesis protein PilO Machinery gene
  IHV80_RS14925 pilN 3325698..3326312 (-) 615 WP_192889513.1 PilN domain-containing protein Machinery gene
  IHV80_RS14930 pilM 3326296..3327321 (-) 1026 WP_192889514.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 61493.14 Da        Isoelectric Point: 4.4022

>NTDB_id=490520 IHV80_RS14910 WP_192889510.1 3322835..3324529(-) (pilQ) [Vibrio bathopelagicus strain Sal10]
MNKGLQGVLLSMMLFFSVMSYAETSPNNLDNIDFRVNKNKDAVIIIELATSTAVVDVQRVQEGLSIELLNTKVDDDKLYL
LDVKDFATLVEGVEVFRETPSTRLLATIADDYQYEYNLKGRFIEVIVSKPLVKERAVEKSVLEKEGKLISINFQDIPVRN
VLQLIADYNDFNLVVSDSVSGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEKSRLEEELG
ELKSEIIKINFAKATDIADMIGGDGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVKQVQIEARIVTV
TEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQIAPYDDNGGDSAIDDYLNVNLGATSPNASSIAFQVAKLGSDTLLDL
ELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSIKVTPQITPDNRLVLDLSVTQDRP
GQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPK
VVIQ

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=490520 IHV80_RS14910 WP_192889510.1 3322835..3324529(-) (pilQ) [Vibrio bathopelagicus strain Sal10]
ATGAACAAAGGGCTACAGGGTGTACTGCTGTCTATGATGTTGTTTTTTAGCGTGATGAGTTACGCAGAGACATCACCCAA
TAATTTGGACAACATCGATTTCAGGGTCAACAAGAACAAAGATGCGGTCATCATTATTGAATTGGCAACCAGCACTGCGG
TGGTCGATGTTCAAAGAGTTCAAGAAGGGCTGAGCATTGAACTGCTCAATACTAAGGTTGATGACGACAAGCTCTATTTG
TTGGATGTAAAAGATTTTGCCACCTTAGTTGAAGGGGTTGAGGTCTTCAGAGAAACGCCGAGTACCCGACTGTTAGCCAC
GATCGCTGATGATTATCAATATGAGTACAACCTAAAAGGTCGCTTTATCGAGGTCATCGTGAGTAAGCCTTTGGTTAAAG
AGAGAGCCGTTGAGAAGAGTGTGTTGGAGAAAGAGGGCAAACTTATCTCAATTAACTTCCAAGACATTCCTGTTCGTAAT
GTTCTTCAACTCATTGCCGATTATAACGATTTCAACCTGGTGGTGTCTGACTCGGTCTCAGGGAACCTCACTTTACGGTT
AGATGGCGTACCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAAGGCTTAGATAAGCGCGTTGATGGTAATGTCA
TCTTGGTTGCGCCAAAAGCTGAACTTGACCTTCGAGAGCAGCAAGCCTTAGAAAAATCTCGTTTGGAAGAAGAGTTGGGT
GAGCTTAAATCGGAAATCATCAAGATTAACTTTGCTAAAGCGACCGACATCGCCGATATGATTGGTGGGGATGGGGCGGT
GAGTATGCTGTCTGATCGTGGCTCGATTACCATTGATGAGAGAACTAACTCGCTGCTCATTCGTGAATTGGAAGAAAACA
TTGCGGTGATACGAGGCATCATTGAATCGTTAGACATTCCCGTGAAGCAAGTTCAGATAGAGGCGCGTATTGTTACAGTG
ACCGAAGGTAACCTTGATGAGTTAGGCGTGCGCTGGGGCGTTTCTTCGACCAACGGAAGCTTCAAAGTCGGCGGCTCGAT
AGAGGGTAATCATCCATCACAAATTGCACCGTATGACGATAATGGTGGGGATAGTGCGATTGACGATTACCTTAACGTTA
ATCTAGGGGCGACATCGCCTAATGCATCAAGCATTGCGTTTCAGGTGGCCAAGCTGGGTTCAGATACCTTGCTTGATCTG
GAATTGTCGGCACTACAACAAGAATCAAAAGCTGAGATTATTTCTAGCCCACGCTTAATCACCACTAATAAAAAGCCCGC
TTACATTGAGCAAGGTACTGAAATCCCTTATTTAGAATCCTCTTCCAGTGGTGCAACTTCCGTCGCATTTAAAAAAGCAG
TCTTGAGTATTAAGGTCACACCGCAGATAACCCCCGACAATCGTTTGGTATTGGATTTGAGCGTGACTCAAGATAGACCA
GGGCAAGTGGTAAAAACCGGAACCGGTGAAGCGGTAGCAATTGACACGCAAAGGATAGGTACGCAAGTGCTTGTTAATAA
TGGTGAAACTGTCGTTCTTGGCGGGATATTTCAACACAGCGTAAGCAGCACGGTGGATAAAGTTCCTCTGTTGGGAGACC
TGCCAGTTTTGGGTGCATTGTTCCGTCGCAGTTATGAAAATGTGGGTAAAAGTGAACTACTTATTTTTGTCACACCCAAA
GTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(404-562)

Secretin and TonB N terminus short domain (STN)

(171-219)

Bacterial type II/III secretion system short domain (Secretin_N)

(245-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

80.657

97.163

0.784
  pilQ Vibrio cholerae strain A1552

78.919

98.404

0.777
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

78.919

98.404

0.777
  pilQ Legionella pneumophila strain ERS1305867

42.962

96.986

0.417
  pilQ Legionella pneumophila strain Lp02

42.962

96.986

0.417
  pilQ Pseudomonas aeruginosa PAK

41.198

97.695

0.402
  comQ Acinetobacter baylyi ADP1

38.957

100

0.397
  pilQ Acinetobacter baumannii strain A118

37.306

100

0.383
  pilQ Acinetobacter baumannii D1279779

37.306

100

0.383