Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   IHV80_RS14930 Genome accession   NZ_CP062500
Coordinates   3326296..3327321 (-) Length   341 a.a.
NCBI ID   WP_192889514.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3321296..3332321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS14905 aroK 3322140..3322658 (-) 519 WP_192889509.1 shikimate kinase AroK -
  IHV80_RS14910 pilQ 3322835..3324529 (-) 1695 WP_192889510.1 type IV pilus secretin PilQ Machinery gene
  IHV80_RS14915 pilP 3324589..3325107 (-) 519 WP_192889511.1 pilus assembly protein PilP Machinery gene
  IHV80_RS14920 pilO 3325094..3325705 (-) 612 WP_192889512.1 type 4a pilus biogenesis protein PilO Machinery gene
  IHV80_RS14925 pilN 3325698..3326312 (-) 615 WP_192889513.1 PilN domain-containing protein Machinery gene
  IHV80_RS14930 pilM 3326296..3327321 (-) 1026 WP_192889514.1 type IV pilus assembly protein PilM Machinery gene
  IHV80_RS14935 - 3327473..3330031 (+) 2559 WP_192889515.1 penicillin-binding protein 1A -
  IHV80_RS14940 oxyR 3330157..3331050 (-) 894 WP_192889516.1 DNA-binding transcriptional regulator OxyR -
  IHV80_RS14945 - 3331255..3331983 (+) 729 WP_004729672.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 38224.73 Da        Isoelectric Point: 6.7737

>NTDB_id=490524 IHV80_RS14930 WP_192889514.1 3326296..3327321(-) (pilM) [Vibrio bathopelagicus strain Sal10]
MGSSLITGIDINHHSIKAVVLKPVGELYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKGLPFGCRNVAISVPDNT
VISKVLQIESELEDREKEFSIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGSTSSYQVYATRKEVVESRADALNKAGFKP
VVVDTQAHGLLNIWQLASRLYPEKKNWLLVDIGIDQTSLGIIPQDSASFYKDIAFGTQDLRGTDSPNDIEDVFGTAEDTH
RFIVNLIEKLKRQLQLYSSVNALQPISGIWLMGEGASTPMLTEELQRHFQLSCESLNPLSLFENKVAKKRRLPMDWQHFG
IAAGMAMSGLKWQGGKHVASN

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=490524 IHV80_RS14930 WP_192889514.1 3326296..3327321(-) (pilM) [Vibrio bathopelagicus strain Sal10]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCATCACAGCATCAAAGCTGTGGTCCTAAAACCCGTTGGGGAGTT
GTATGCCTTAGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTCTGGAGTATCAGAAAA
CTGTTAAGAAACTCAAAGAACTTAGGAAAGGTCTGCCTTTTGGCTGCCGCAACGTCGCCATTTCGGTACCTGATAACACG
GTGATCAGCAAAGTACTGCAAATAGAGAGTGAATTAGAAGACAGAGAAAAAGAGTTTTCGATCTATCAAACCTTTGCTCA
CCAGTCTCCCTTTCCTATCGAGGAGCTGAGTTTAGATTTTGTAAAGCTGGAAGACAAACGATTTGGTAAAGGATCGACAA
GCAGTTATCAGGTGTATGCCACTCGCAAAGAAGTAGTGGAGAGTCGGGCGGATGCTTTAAACAAAGCCGGCTTTAAACCT
GTCGTCGTCGACACCCAAGCACATGGCCTGCTCAATATTTGGCAGTTGGCTTCTCGTCTTTATCCAGAAAAAAAGAATTG
GTTATTGGTTGATATCGGAATCGACCAAACCTCGCTCGGGATTATCCCGCAGGATTCGGCATCCTTCTATAAAGACATCG
CTTTTGGTACTCAAGACCTTCGCGGTACTGACAGCCCTAATGATATAGAGGATGTGTTCGGCACGGCTGAGGATACACAT
CGGTTTATTGTTAATTTGATCGAAAAGCTCAAGCGTCAGTTACAACTCTATTCCTCGGTGAATGCACTTCAGCCGATATC
CGGGATTTGGTTGATGGGCGAGGGAGCCAGCACGCCGATGCTGACGGAAGAGTTACAAAGACATTTTCAGTTAAGTTGTG
AATCGCTGAATCCTTTGTCGTTATTTGAAAATAAGGTCGCGAAGAAGCGTCGCTTACCCATGGACTGGCAACATTTTGGG
ATTGCCGCGGGTATGGCGATGAGCGGACTCAAATGGCAAGGGGGAAAGCATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(242-328)

Type IV pilus assembly protein PilM; (PilM_2)

(8-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

54.572

99.413

0.543
  pilM Vibrio campbellii strain DS40M4

50

100

0.501