Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   IHV80_RS14920 Genome accession   NZ_CP062500
Coordinates   3325094..3325705 (-) Length   203 a.a.
NCBI ID   WP_192889512.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3320094..3330705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS14900 aroB 3321026..3322114 (-) 1089 WP_017104650.1 3-dehydroquinate synthase -
  IHV80_RS14905 aroK 3322140..3322658 (-) 519 WP_192889509.1 shikimate kinase AroK -
  IHV80_RS14910 pilQ 3322835..3324529 (-) 1695 WP_192889510.1 type IV pilus secretin PilQ Machinery gene
  IHV80_RS14915 pilP 3324589..3325107 (-) 519 WP_192889511.1 pilus assembly protein PilP Machinery gene
  IHV80_RS14920 pilO 3325094..3325705 (-) 612 WP_192889512.1 type 4a pilus biogenesis protein PilO Machinery gene
  IHV80_RS14925 pilN 3325698..3326312 (-) 615 WP_192889513.1 PilN domain-containing protein Machinery gene
  IHV80_RS14930 pilM 3326296..3327321 (-) 1026 WP_192889514.1 type IV pilus assembly protein PilM Machinery gene
  IHV80_RS14935 - 3327473..3330031 (+) 2559 WP_192889515.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23459.96 Da        Isoelectric Point: 4.3571

>NTDB_id=490522 IHV80_RS14920 WP_192889512.1 3325094..3325705(-) (pilO) [Vibrio bathopelagicus strain Sal10]
MASFQNMVSLQDLDVDEITEWPLLPQLAVVLLLMVLIQGVGVWLYIMPMDDELQQLKQQEQTLKATLRIKANKVAALPKL
QSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNALTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGDFSAAIA
KLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKPEVDDEIQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=490522 IHV80_RS14920 WP_192889512.1 3325094..3325705(-) (pilO) [Vibrio bathopelagicus strain Sal10]
ATGGCTAGTTTTCAAAATATGGTCAGCTTGCAAGACCTTGATGTCGATGAGATCACTGAATGGCCGTTACTGCCTCAATT
AGCGGTGGTTCTACTGCTGATGGTATTGATTCAGGGCGTTGGCGTTTGGCTGTACATCATGCCAATGGATGATGAACTGC
AACAATTGAAGCAGCAAGAGCAGACTTTGAAAGCCACTTTAAGGATTAAAGCCAATAAGGTCGCTGCTCTACCTAAACTT
CAGAGCCAGTTGGATGAACTGACTAGCCGCTACGATTATCTGTTAGAGCAATTACCTGTGCAAAAAGAGCTCGCCAGTAT
GTTGGCTTCCGTCAATGAACTTGGCTTAGATAATGCGCTGACCTTTACTCGAATTGATTGGGGACAAAAGCAGAACAAAG
AGTTTCTTTATCGCTTACCACTCAATATCGAGCTAACTGGTGATTACCACGAGATTGGCGACTTCTCCGCAGCCATCGCA
AAGCTGCCGCGCATTATTAGCTTCGATGATGTGAATTGGCAGCGAGTCAGTCAAGAAAGCAGCACGTTGCACTTCCGAGT
TCGCGCTTATACCTACCAGTTTAAACCGGAGGTAGACGATGAAATCCAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(53-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

77.949

96.059

0.749
  pilO Vibrio campbellii strain DS40M4

73.158

93.596

0.685