Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IHV80_RS14925 Genome accession   NZ_CP062500
Coordinates   3325698..3326312 (-) Length   204 a.a.
NCBI ID   WP_192889513.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3320698..3331312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS14900 aroB 3321026..3322114 (-) 1089 WP_017104650.1 3-dehydroquinate synthase -
  IHV80_RS14905 aroK 3322140..3322658 (-) 519 WP_192889509.1 shikimate kinase AroK -
  IHV80_RS14910 pilQ 3322835..3324529 (-) 1695 WP_192889510.1 type IV pilus secretin PilQ Machinery gene
  IHV80_RS14915 pilP 3324589..3325107 (-) 519 WP_192889511.1 pilus assembly protein PilP Machinery gene
  IHV80_RS14920 pilO 3325094..3325705 (-) 612 WP_192889512.1 type 4a pilus biogenesis protein PilO Machinery gene
  IHV80_RS14925 pilN 3325698..3326312 (-) 615 WP_192889513.1 PilN domain-containing protein Machinery gene
  IHV80_RS14930 pilM 3326296..3327321 (-) 1026 WP_192889514.1 type IV pilus assembly protein PilM Machinery gene
  IHV80_RS14935 - 3327473..3330031 (+) 2559 WP_192889515.1 penicillin-binding protein 1A -
  IHV80_RS14940 oxyR 3330157..3331050 (-) 894 WP_192889516.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23449.92 Da        Isoelectric Point: 8.4961

>NTDB_id=490523 IHV80_RS14925 WP_192889513.1 3325698..3326312(-) (pilN) [Vibrio bathopelagicus strain Sal10]
MLHQINLLPWRDEIRTQHKKRFVHLVILGVIIALAGQWAVGTYFHDQQDKQQARLTYLKQYIAQLDRQIQSLKVAEQEHK
AILTRLDVVESLQLGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSESLESVEMHSIV
HNRKRFNKEFQTFKVSFVFSPVSLEKTTAESTTAKIKDTGANHG

Nucleotide


Download         Length: 615 bp        

>NTDB_id=490523 IHV80_RS14925 WP_192889513.1 3325698..3326312(-) (pilN) [Vibrio bathopelagicus strain Sal10]
ATGTTGCATCAAATTAACCTGCTGCCTTGGCGCGATGAGATTCGCACTCAGCACAAAAAGCGCTTTGTTCATCTGGTCAT
TCTTGGCGTCATCATCGCGCTTGCAGGGCAATGGGCAGTCGGTACCTATTTTCATGACCAACAAGACAAGCAGCAAGCTC
GTCTTACTTACCTAAAGCAATACATTGCCCAGCTCGACCGACAAATTCAGTCGCTGAAAGTTGCGGAGCAAGAACATAAA
GCGATCCTGACTCGACTCGACGTTGTGGAGTCCTTACAGCTTGGGCGCAACAAGACCACCGACTTTATGAACCTGATGCC
GGAGCTGATTCCTGAGGGCGTCTATGTCGACAAGATAAAGATGAATGGTCAGGAAATTGAAATGTCGGGCATCAGCGACA
GTACCGCTCGCCTCGCGACTATGTTGGATAATTTAGAGCGCTCCGAGTCACTTGAAAGTGTCGAAATGCATTCAATTGTT
CATAACCGCAAGCGCTTCAATAAGGAGTTCCAGACCTTCAAGGTCTCCTTTGTGTTTAGCCCTGTTTCTTTAGAAAAAAC
AACCGCAGAGAGCACAACCGCGAAGATAAAAGATACGGGGGCGAACCATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

64.674

90.196

0.583
  pilN Vibrio campbellii strain DS40M4

64.324

90.686

0.583