Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   KEF49_RS17425 Genome accession   NZ_CP073635
Coordinates   3440712..3441053 (-) Length   113 a.a.
NCBI ID   WP_065982516.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3435712..3446053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS17410 (KEF49_17410) - 3435980..3438754 (+) 2775 WP_212099598.1 DEAD/DEAH box helicase -
  KEF49_RS17415 (KEF49_17415) - 3438867..3439724 (-) 858 WP_212099599.1 Cof-type HAD-IIB family hydrolase -
  KEF49_RS17420 (KEF49_17420) - 3439721..3440503 (-) 783 WP_045512580.1 DeoR/GlpR family DNA-binding transcription regulator -
  KEF49_RS17425 (KEF49_17425) ssbB 3440712..3441053 (-) 342 WP_065982516.1 single-stranded DNA-binding protein Machinery gene
  KEF49_RS17430 (KEF49_17430) - 3441150..3441500 (-) 351 WP_065982517.1 hypothetical protein -
  KEF49_RS17435 (KEF49_17435) - 3441672..3442082 (+) 411 WP_013353872.1 YwpF-like family protein -
  KEF49_RS17440 (KEF49_17440) mscL 3442128..3442523 (-) 396 WP_013353873.1 large conductance mechanosensitive channel protein MscL -
  KEF49_RS17445 (KEF49_17445) fabZ 3442579..3443004 (-) 426 WP_113766487.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KEF49_RS17450 (KEF49_17450) - 3443199..3444263 (+) 1065 WP_212099600.1 tetratricopeptide repeat protein -
  KEF49_RS17455 (KEF49_17455) - 3444281..3445102 (-) 822 WP_212101779.1 flagellar hook-basal body protein -
  KEF49_RS17460 (KEF49_17460) - 3445127..3445924 (-) 798 WP_065982520.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12634.50 Da        Isoelectric Point: 9.5812

>NTDB_id=487689 KEF49_RS17425 WP_065982516.1 3440712..3441053(-) (ssbB) [Bacillus amyloliquefaciens strain Ba13]
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVSRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=487689 KEF49_RS17425 WP_065982516.1 3440712..3441053(-) (ssbB) [Bacillus amyloliquefaciens strain Ba13]
TTGTTTAACCACGTTATGCTTGTCGGACGGCTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATCCCTGTCGC
TCATATTACCTTGGCGGTGAGCCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGTACGGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCGCTGTACTGCCAAAAAGGGTCAATGGTCGGTGTGAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTCTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.106

100

0.761
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

93.805

0.531
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

93.805

0.487
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.018

100

0.46
  ssbA Streptococcus mutans UA159

41.593

100

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae D39

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae R6

39.823

100

0.398
  ssbB/cilA Streptococcus mitis SK321

39.823

100

0.398
  ssbB Lactococcus lactis subsp. cremoris KW2

36.607

99.115

0.363