Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   IE382_RS21740 Genome accession   NZ_CP061870
Coordinates   4051480..4051821 (-) Length   113 a.a.
NCBI ID   WP_014478203.1    Uniprot ID   A0A0C3GLH9
Organism   Bacillus subtilis strain FX-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4046480..4056821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS21725 (IE382_21630) hepA 4046722..4049490 (+) 2769 WP_041334773.1 DEAD/DEAH box helicase -
  IE382_RS21730 (IE382_21635) ywpJ 4049616..4050473 (-) 858 WP_017696583.1 phosphatase YwpJ -
  IE382_RS21735 (IE382_21640) glcR 4050479..4051255 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  IE382_RS21740 (IE382_21645) ssbB 4051480..4051821 (-) 342 WP_014478203.1 single-stranded DNA-binding protein SsbB Machinery gene
  IE382_RS21745 (IE382_21650) ywpG 4051898..4052281 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  IE382_RS21750 (IE382_21655) ywpF 4052456..4052866 (+) 411 WP_014481144.1 YwpF-like family protein -
  IE382_RS21755 (IE382_21660) - 4053006..4053398 (-) 393 Protein_4236 class A sortase -
  IE382_RS21760 - 4053385..4053762 (-) 378 WP_234939149.1 prealbumin-like fold domain-containing protein -
  IE382_RS21765 (IE382_21670) ywpD 4053646..4054482 (+) 837 WP_026113665.1 histidine kinase -
  IE382_RS21770 (IE382_21675) mscL 4054529..4054924 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  IE382_RS21775 (IE382_21680) fabZ 4054997..4055422 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IE382_RS21780 (IE382_21685) rapD 4055614..4056678 (+) 1065 WP_017696040.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12462.11 Da        Isoelectric Point: 7.8150

>NTDB_id=485472 IE382_RS21740 WP_014478203.1 4051480..4051821(-) (ssbB) [Bacillus subtilis strain FX-1]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=485472 IE382_RS21740 WP_014478203.1 4051480..4051821(-) (ssbB) [Bacillus subtilis strain FX-1]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCAGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3GLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389