Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   IC788_RS16890 Genome accession   NZ_CP061596
Coordinates   3592929..3593255 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter seifertii strain AS59     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3587929..3598255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS16870 (IC788_16870) - 3588035..3588661 (-) 627 WP_049065291.1 FHA domain-containing protein -
  IC788_RS16875 (IC788_16875) gspD 3588702..3590978 (-) 2277 WP_191000812.1 type II secretion system secretin GspD -
  IC788_RS16880 (IC788_16880) - 3591020..3591856 (-) 837 WP_191000813.1 type II secretion system protein N -
  IC788_RS16885 (IC788_16885) gspN 3591856..3592599 (-) 744 WP_004699190.1 type II secretion system protein N -
  IC788_RS16890 (IC788_16890) hns 3592929..3593255 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  IC788_RS16895 (IC788_16895) - 3593449..3593889 (-) 441 WP_004699193.1 acyl-CoA thioesterase -
  IC788_RS16900 (IC788_16900) - 3593897..3595090 (-) 1194 WP_019457025.1 hypothetical protein -
  IC788_RS16905 (IC788_16905) - 3595100..3595939 (-) 840 WP_191000814.1 hypothetical protein -
  IC788_RS16910 (IC788_16910) - 3595948..3596715 (-) 768 WP_191000815.1 uroporphyrinogen-III synthase -
  IC788_RS16915 (IC788_16915) hemC 3596720..3597637 (-) 918 WP_191000816.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=483456 IC788_RS16890 WP_002053185.1 3592929..3593255(-) (hns) [Acinetobacter seifertii strain AS59]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=483456 IC788_RS16890 WP_002053185.1 3592929..3593255(-) (hns) [Acinetobacter seifertii strain AS59]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACTACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991