Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IC788_RS16590 Genome accession   NZ_CP061596
Coordinates   3531935..3533161 (+) Length   408 a.a.
NCBI ID   WP_134262170.1    Uniprot ID   A0A5E9PSA4
Organism   Acinetobacter seifertii strain AS59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3526935..3538161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS16555 (IC788_16555) rimP 3527607..3528131 (-) 525 WP_002157009.1 ribosome maturation factor RimP -
  IC788_RS16575 (IC788_16575) secG 3528769..3529098 (-) 330 WP_019456770.1 preprotein translocase subunit SecG -
  IC788_RS16580 (IC788_16580) tpiA 3529111..3529905 (-) 795 WP_134262172.1 triose-phosphate isomerase -
  IC788_RS16585 (IC788_16585) pilB 3530195..3531907 (+) 1713 WP_191000794.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IC788_RS16590 (IC788_16590) pilC 3531935..3533161 (+) 1227 WP_134262170.1 type II secretion system F family protein Machinery gene
  IC788_RS18560 (IC788_16595) pilD 3533161..3534021 (+) 861 WP_134262169.1 prepilin peptidase Machinery gene
  IC788_RS16600 (IC788_16600) coaE 3534023..3534619 (+) 597 WP_049064240.1 dephospho-CoA kinase -
  IC788_RS16605 (IC788_16605) - 3534616..3535530 (-) 915 WP_134262168.1 DMT family transporter -
  IC788_RS16610 (IC788_16610) rlmB 3535562..3536314 (-) 753 WP_191000795.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IC788_RS16615 (IC788_16615) - 3536418..3536744 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  IC788_RS16620 (IC788_16620) - 3536821..3537258 (-) 438 Protein_3246 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44941.40 Da        Isoelectric Point: 9.8883

>NTDB_id=483455 IC788_RS16590 WP_134262170.1 3531935..3533161(+) (pilC) [Acinetobacter seifertii strain AS59]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKSEVEGGSTFASALKKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIVAIGTVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=483455 IC788_RS16590 WP_134262170.1 3531935..3533161(+) (pilC) [Acinetobacter seifertii strain AS59]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGGGA
ACTTCCAGCCAAAAATATGGCTTTAGCTAAAGTGACCTTACGCAAACAAGGAGTTACTGTTCGAACCATACGTGAGAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTATCAACGCTTGATATTACGATTTTTACCCGACAACTGGCAACC
ATGATGAAAGCTGGTGTACCGCTGGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAATCCCGCTATGCGTGAGGT
GGTACTGGGTATTAAAAGTGAAGTTGAAGGCGGGAGTACTTTTGCCTCAGCTTTAAAAAAGTATCCTCAGCATTTTGACA
ATTTATTTTGTTCTCTAGTGGAGTCTGGTGAACAATCAGGTGCACTTGAAACTATGCTAGATCGTGTGGCGATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAGAAAATCAAGAAAGCAATGAAATATCCGGCCACGGTTATTGTAGTAGCAATTGTGGT
GACCATTATTTTGATGGTTAAAGTCGTACCCGTGTTTCAGGATCTATTTGCTTCATTTGGAGCAGATTTACCTGCTTTCA
CACAAATGGTCGTAAATATGTCGAAATGGATGCAGGAGTACTGGTTCATTATGATTGTTGCAATTGGTACTGTGATTGCT
GCCTTCCTTGAGGCAAAAAAACGTAGTAAAAAGTTTCGTGATGGCTTGGATAAGCTGGCACTTAAATTACCTATTTTTGG
AGACTTAGTTTATAAAGCAATTATTGCTCGGTATAGCCGTACTTTAGCCACTACGTTTGCCGCAGGTGTTCCACTGATTG
ATGCGCTAGAATCAACTGCCGGTGCAACCAACAATGTTATTTATGAGCAAGCTGTCATGAAAATTCGTGAAGATGTCGCA
ACAGGTCAGCAACTTCAGTTTGCCATGCGTGTATCAAACCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCTACCTATTATGAAAATGAAGTTGATAATGCGGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTACTGGTAGGCGGTCTGGTGATTGCCATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E9PSA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.794

100

0.978
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

46.366

97.794

0.453
  pilG Neisseria meningitidis 44/76-A

46.366

97.794

0.453
  pilC Vibrio cholerae strain A1552

41.912

100

0.419
  pilC Vibrio campbellii strain DS40M4

40.842

99.02

0.404