NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	IC788_RS18560	Genome accession	NZ_CP061596
Coordinates	3533161..3534021 (+)	Length	286 a.a.
NCBI ID	WP_134262169.1	Uniprot ID	A0A5E9PIG7
Organism	Acinetobacter seifertii strain AS59
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3528161..3539021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC788_RS16575 (IC788_16575)	secG	3528769..3529098 (-)	330	WP_019456770.1	preprotein translocase subunit SecG	-
IC788_RS16580 (IC788_16580)	tpiA	3529111..3529905 (-)	795	WP_134262172.1	triose-phosphate isomerase	-
IC788_RS16585 (IC788_16585)	pilB	3530195..3531907 (+)	1713	WP_191000794.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IC788_RS16590 (IC788_16590)	pilC	3531935..3533161 (+)	1227	WP_134262170.1	type II secretion system F family protein	Machinery gene
IC788_RS18560 (IC788_16595)	pilD	3533161..3534021 (+)	861	WP_134262169.1	prepilin peptidase	Machinery gene
IC788_RS16600 (IC788_16600)	coaE	3534023..3534619 (+)	597	WP_049064240.1	dephospho-CoA kinase	-
IC788_RS16605 (IC788_16605)	-	3534616..3535530 (-)	915	WP_134262168.1	DMT family transporter	-
IC788_RS16610 (IC788_16610)	rlmB	3535562..3536314 (-)	753	WP_191000795.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IC788_RS16615 (IC788_16615)	-	3536418..3536744 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
IC788_RS16620 (IC788_16620)	-	3536821..3537258 (-)	438	Protein_3246	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32164.58 Da Isoelectric Point: 7.1038

                                >NTDB_id=483465 IC788_RS18560 WP_134262169.1 3533161..3534021(+) (pilD) [Acinetobacter seifertii strain AS59]

MQDIIAYFIQNLTALYVAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPNCHQP

IRWYQNIPIVSWLMLRGKCGYCQHPISIRYPAIELLTMLCSVVVVMVFGPTIQMLWGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPSSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNENQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=483465 IC788_RS18560 WP_134262169.1 3533161..3534021(+) (pilD) [Acinetobacter seifertii strain AS59]

ATGCAAGATATTATTGCTTATTTTATTCAAAACCTAACTGCACTTTATGTTGCAGTTGCACTCGTGAGCCTATGTATTGG

TAGCTTTCTGAATGTAGTGATTTATCGGACTCCAAAAATGATGGAGCAAGACTGGCAGCAAGAATGTCAAATGCTCCTAA

ATCCAGAGCAACCCATTATTGACCATGAAAAACTAACATTAAGCAAACCTGCTTCATCATGTCCAAATTGCCACCAACCG

ATCCGTTGGTATCAAAATATTCCTATCGTAAGCTGGTTGATGCTAAGAGGAAAATGTGGTTATTGCCAACATCCTATCAG

CATTCGTTATCCAGCAATTGAACTACTCACCATGCTATGCTCTGTGGTAGTGGTTATGGTATTTGGCCCAACTATACAAA

TGCTTTGGGGACTCGTTCTTACTTGGGTACTGATTGCCCTTACCTTTATTGATTTCGATACGCAGTTATTACCTGATCGC

TTTACCCTGCCTTTGGCTGCACTCGGCTTAGGAATTAACACCTTTAATATTTACACCTCACCTAGCTCAGCCATTTGGGG

ATATTTAATTGGTTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACTGGCAAAGAAGGTATGGGCTACG

GTGACTTTAAATTGCTTGCCGCATTGGGCGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGTTATTGTCATCTTTA

TTGGGTGCAATTATTGGCATCATTTTATTAAAGTTAAGAAATGAAAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAGATTTATTTAGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A5E9PIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Acinetobacter baumannii D1279779	95.455	100	0.955
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	48.485	92.308	0.448

Detailed information NTG0483465