Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   IC803_RS00755 Genome accession   NZ_CP061474
Coordinates   166143..166502 (+) Length   119 a.a.
NCBI ID   WP_190304243.1    Uniprot ID   -
Organism   Geobacillus sp. 46C-IIa     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 161143..171502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC803_RS00730 (IC803_00730) - 161595..162029 (+) 435 WP_081210741.1 DUF1284 domain-containing protein -
  IC803_RS00735 (IC803_00735) - 162180..163556 (+) 1377 WP_081210739.1 aspartate kinase -
  IC803_RS00740 (IC803_00740) - 163703..164635 (+) 933 WP_081210777.1 processed acidic surface protein -
  IC803_RS00745 (IC803_00745) - 164641..165321 (+) 681 WP_081210737.1 class D sortase -
  IC803_RS00750 (IC803_00750) - 165430..165870 (-) 441 WP_063164692.1 YwpF-like family protein -
  IC803_RS00755 (IC803_00755) ssbB 166143..166502 (+) 360 WP_190304243.1 single-stranded DNA-binding protein Machinery gene
  IC803_RS00760 (IC803_00760) - 166634..167044 (-) 411 WP_063164693.1 helix-turn-helix domain-containing protein -
  IC803_RS00765 (IC803_00765) - 167260..167757 (+) 498 WP_081210736.1 hypothetical protein -
  IC803_RS00770 (IC803_00770) - 167975..169357 (+) 1383 WP_143421107.1 peptidoglycan-binding protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13408.24 Da        Isoelectric Point: 9.5562

>NTDB_id=482543 IC803_RS00755 WP_190304243.1 166143..166502(+) (ssbB) [Geobacillus sp. 46C-IIa]
MQRNMINQVVLVGRLTKDPELRYTAEGAAVTTVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDNKDGQRVYVTEVVADSVQFLHSGKAREWPEHV

Nucleotide


Download         Length: 360 bp        

>NTDB_id=482543 IC803_RS00755 WP_190304243.1 166143..166502(+) (ssbB) [Geobacillus sp. 46C-IIa]
ATGCAACGGAACATGATCAATCAAGTCGTACTTGTCGGCCGGTTGACGAAGGACCCGGAGCTTCGCTACACGGCCGAGGG
GGCGGCCGTGACAACCGTTACGCTGGCGGTAGCGAGAAATTTTCGCAACGCGGAAGGGGGGATCGATGCCGATTTCGTTC
CGTGTGTTTTATGGCGGAAAACGGCGGAACATACCGCCAATTACTGCCGAAAAGGATCAATGGTGGCGGTAACGGGAAGA
ATTCAGACGCGCCGCTATGACAATAAAGATGGCCAGCGCGTCTATGTGACCGAAGTCGTCGCCGATTCCGTTCAGTTTCT
TCACTCCGGCAAAGCGCGAGAATGGCCGGAGCATGTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.273

92.437

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.423

87.395

0.563
  ssb Latilactobacillus sakei subsp. sakei 23K

61.905

88.235

0.546
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.368

95.798

0.454
  ssbA Streptococcus mutans UA159

44.737

95.798

0.429
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.86

95.798

0.42
  ssbB/cilA Streptococcus mitis NCTC 12261

43.86

95.798

0.42
  ssbB/cilA Streptococcus pneumoniae Rx1

42.982

95.798

0.412
  ssbB/cilA Streptococcus mitis SK321

42.982

95.798

0.412
  ssbB/cilA Streptococcus pneumoniae D39

42.982

95.798

0.412
  ssbB/cilA Streptococcus pneumoniae R6

42.982

95.798

0.412
  ssbB Lactococcus lactis subsp. cremoris KW2

42.308

87.395

0.37