Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   IC804_RS08140 Genome accession   NZ_CP061473
Coordinates   1591079..1591438 (-) Length   119 a.a.
NCBI ID   WP_190300684.1    Uniprot ID   -
Organism   Geobacillus sp. 47C-IIb     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1586079..1596438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC804_RS08125 (IC804_08125) - 1587632..1588987 (-) 1356 Protein_1615 peptidoglycan-binding protein -
  IC804_RS19030 - 1589084..1589608 (-) 525 Protein_1616 peptidoglycan-binding protein -
  IC804_RS08130 (IC804_08130) - 1589825..1590325 (-) 501 WP_008880384.1 hypothetical protein -
  IC804_RS08135 (IC804_08135) - 1590539..1590949 (+) 411 WP_029761384.1 helix-turn-helix domain-containing protein -
  IC804_RS08140 (IC804_08140) ssbB 1591079..1591438 (-) 360 WP_190300684.1 single-stranded DNA-binding protein Machinery gene
  IC804_RS08145 (IC804_08145) - 1591710..1592150 (+) 441 WP_011888252.1 YwpF-like family protein -
  IC804_RS08150 (IC804_08150) - 1592337..1593008 (-) 672 WP_081157469.1 class D sortase -
  IC804_RS08155 (IC804_08155) - 1593015..1593983 (-) 969 WP_081157468.1 processed acidic surface protein -
  IC804_RS08160 (IC804_08160) - 1594093..1595469 (-) 1377 WP_081157467.1 aspartate kinase -
  IC804_RS08165 (IC804_08165) - 1595620..1596054 (-) 435 WP_008880391.1 DUF1284 domain-containing protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13482.37 Da        Isoelectric Point: 9.0849

>NTDB_id=482515 IC804_RS08140 WP_190300684.1 1591079..1591438(-) (ssbB) [Geobacillus sp. 47C-IIb]
MHRNMINQVVLVGRLTKDPELRYTAEGTAVTTVILAVARNFRNADGGIDADFVPCVLWRKTAEHTAHYCQKGSMVAVTGR
IQTRRYENKDGQRVYVTEVVADSVQFLHSGKVREWPEHV

Nucleotide


Download         Length: 360 bp        

>NTDB_id=482515 IC804_RS08140 WP_190300684.1 1591079..1591438(-) (ssbB) [Geobacillus sp. 47C-IIb]
ATGCACCGGAACATGATCAATCAAGTCGTACTTGTCGGCCGATTGACGAAGGATCCAGAGCTTCGTTACACGGCCGAAGG
GACGGCCGTTACAACCGTGATCTTGGCGGTAGCAAGAAATTTTCGCAACGCGGACGGGGGGATTGATGCTGACTTCGTTC
CGTGTGTCCTATGGCGGAAAACGGCAGAGCATACTGCCCATTATTGCCAAAAAGGATCGATGGTGGCGGTAACGGGTAGA
ATCCAGACGCGCCGTTATGAAAACAAAGACGGCCAGCGCGTCTATGTGACGGAAGTCGTAGCCGATTCAGTTCAGTTTCT
CCACTCCGGCAAAGTGCGAGAATGGCCGGAGCACGTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.273

92.437

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

87.395

0.546
  ssb Latilactobacillus sakei subsp. sakei 23K

60.952

88.235

0.538
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.246

95.798

0.462
  ssbA Streptococcus mutans UA159

45.614

95.798

0.437
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.86

95.798

0.42
  ssbB/cilA Streptococcus mitis NCTC 12261

43.86

95.798

0.42
  ssbB/cilA Streptococcus pneumoniae Rx1

42.982

95.798

0.412
  ssbB/cilA Streptococcus pneumoniae D39

42.982

95.798

0.412
  ssbB/cilA Streptococcus pneumoniae R6

42.982

95.798

0.412
  ssbB/cilA Streptococcus mitis SK321

42.982

95.798

0.412
  ssbB Lactococcus lactis subsp. cremoris KW2

41.346

87.395

0.361