Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   J5X95_RS06950 Genome accession   NZ_CP072120
Coordinates   1370938..1371279 (-) Length   113 a.a.
NCBI ID   WP_094031351.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1365938..1376279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS06935 (J5X95_06935) - 1366206..1368980 (+) 2775 WP_039063769.1 DEAD/DEAH box helicase -
  J5X95_RS06940 (J5X95_06940) - 1369093..1369950 (-) 858 WP_216448254.1 Cof-type HAD-IIB family hydrolase -
  J5X95_RS06945 (J5X95_06945) - 1369947..1370729 (-) 783 WP_003151250.1 DeoR/GlpR family DNA-binding transcription regulator -
  J5X95_RS06950 (J5X95_06950) ssbB 1370938..1371279 (-) 342 WP_094031351.1 single-stranded DNA-binding protein Machinery gene
  J5X95_RS06955 (J5X95_06955) - 1371377..1371730 (-) 354 WP_003151247.1 hypothetical protein -
  J5X95_RS06960 (J5X95_06960) - 1371903..1372313 (+) 411 WP_012118638.1 YwpF-like family protein -
  J5X95_RS06965 (J5X95_06965) mscL 1372359..1372754 (-) 396 WP_015418395.1 large conductance mechanosensitive channel protein MscL -
  J5X95_RS06970 (J5X95_06970) fabZ 1372811..1373236 (-) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  J5X95_RS06975 (J5X95_06975) - 1373432..1374496 (+) 1065 WP_040238774.1 tetratricopeptide repeat protein -
  J5X95_RS06980 (J5X95_06980) - 1374514..1375335 (-) 822 WP_012118640.1 flagellar hook-basal body protein -
  J5X95_RS06985 (J5X95_06985) - 1375360..1376157 (-) 798 WP_007614310.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12616.53 Da        Isoelectric Point: 9.5812

>NTDB_id=480736 J5X95_RS06950 WP_094031351.1 1370938..1371279(-) (ssbB) [Bacillus amyloliquefaciens strain GKT04]
MFNHVMLVGRLTKDPDLRFTAAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRILTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=480736 J5X95_RS06950 WP_094031351.1 1370938..1371279(-) (ssbB) [Bacillus amyloliquefaciens strain GKT04]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGATCTCCGTTTTACAGCAGCGGGCATTCCCGTCGC
GCATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGTACCATCT
GGAGAAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCTGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.106

100

0.761
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.66

93.805

0.522
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

93.805

0.487
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.018

100

0.46
  ssbA Streptococcus mutans UA159

41.593

100

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae D39

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae R6

39.823

100

0.398
  ssbB/cilA Streptococcus mitis SK321

39.823

100

0.398
  ssbB Lactococcus lactis subsp. cremoris KW2

36.607

99.115

0.363