Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   IBL27_RS00980 Genome accession   NZ_CP061071
Coordinates   204872..205186 (+) Length   104 a.a.
NCBI ID   WP_002279331.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 199872..210186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS00965 (IBL27_00965) - 202449..202832 (+) 384 WP_002263434.1 DUF1033 family protein -
  IBL27_RS00970 (IBL27_00970) comYA 202964..203905 (+) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  IBL27_RS00975 (IBL27_00975) comYB 203841..204872 (+) 1032 WP_255264529.1 competence type IV pilus assembly protein ComGB Machinery gene
  IBL27_RS00980 (IBL27_00980) comYC 204872..205186 (+) 315 WP_002279331.1 competence type IV pilus major pilin ComGC Machinery gene
  IBL27_RS00985 (IBL27_00985) comYD 205173..205577 (+) 405 WP_002279330.1 competence type IV pilus minor pilin ComGD Machinery gene
  IBL27_RS00990 (IBL27_00990) comYE 205549..205842 (+) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  IBL27_RS00995 (IBL27_00995) comYF 205829..206263 (+) 435 WP_002264245.1 competence type IV pilus minor pilin ComGF Machinery gene
  IBL27_RS01000 (IBL27_01000) comYG 206241..206630 (+) 390 WP_002263441.1 competence type IV pilus minor pilin ComGG Machinery gene
  IBL27_RS01005 (IBL27_01005) comYH 206685..207638 (+) 954 WP_002309243.1 class I SAM-dependent methyltransferase Machinery gene
  IBL27_RS01010 (IBL27_01010) - 207697..208896 (+) 1200 WP_002265895.1 acetate kinase -
  IBL27_RS01015 (IBL27_01015) - 209449..209694 (+) 246 WP_002265894.1 helix-turn-helix transcriptional regulator -
  IBL27_RS01020 (IBL27_01020) - 209663..210103 (+) 441 WP_002265893.1 hypothetical protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11577.58 Da        Isoelectric Point: 10.2206

>NTDB_id=480217 IBL27_RS00980 WP_002279331.1 204872..205186(+) (comYC) [Streptococcus mutans B04Sm5]
MKKVKRVSVRAFTLIEMLVVLLIISILLLLFVPNLTKQKDKVKDTGGSAVVKVVESQAELYELNKTDSATLSKLVASGDI
TQEQANSYKDYYAKHPSKTRHVAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=480217 IBL27_RS00980 WP_002279331.1 204872..205186(+) (comYC) [Streptococcus mutans B04Sm5]
ATGAAAAAGGTCAAGAGAGTCAGTGTACGGGCTTTTACGCTTATAGAAATGTTAGTAGTTCTTCTCATTATTAGTATTCT
TTTACTATTATTTGTTCCTAATTTAACTAAGCAAAAAGATAAGGTAAAAGATACTGGCGGTTCTGCCGTGGTTAAAGTTG
TAGAAAGTCAGGCTGAGCTTTATGAGCTTAATAAAACCGATTCTGCTACTCTTTCTAAATTAGTAGCTAGTGGTGATATT
ACACAAGAACAGGCAAATTCATACAAGGATTACTATGCAAAACACCCAAGTAAAACACGGCATGTCGCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

99.038

100

0.99
  comYC Streptococcus mutans UA159

99.038

100

0.99
  comYC Streptococcus gordonii str. Challis substr. CH1

71.429

100

0.721
  comGC/cglC Streptococcus mitis SK321

66.667

95.192

0.635
  comGC/cglC Streptococcus mitis NCTC 12261

69.565

88.462

0.615
  comGC/cglC Streptococcus pneumoniae R6

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae Rx1

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae D39

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae TIGR4

63.636

95.192

0.606
  comGC Lactococcus lactis subsp. cremoris KW2

59.14

89.423

0.529
  comYC Streptococcus suis isolate S10

60.227

84.615

0.51