Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   J5D27_RS05445 Genome accession   NZ_CP071981
Coordinates   1172726..1174702 (-) Length   658 a.a.
NCBI ID   WP_209525546.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5111     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1167726..1179702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D27_RS05425 (J5D27_05425) - 1167964..1169187 (+) 1224 WP_001129874.1 2-oxoacid:ferredoxin oxidoreductase subunit alpha -
  J5D27_RS05430 (J5D27_05430) - 1169200..1170144 (+) 945 WP_000238175.1 thiamine pyrophosphate-dependent enzyme -
  J5D27_RS05435 (J5D27_05435) purB 1170253..1171575 (+) 1323 WP_000893844.1 adenylosuccinate lyase -
  J5D27_RS05440 (J5D27_05440) - 1171868..1172701 (+) 834 WP_209525545.1 outer membrane protein -
  J5D27_RS05445 (J5D27_05445) uvrB 1172726..1174702 (-) 1977 WP_209525546.1 excinuclease ABC subunit UvrB Machinery gene
  J5D27_RS05450 (J5D27_05450) - 1174751..1175554 (-) 804 WP_209525548.1 hypothetical protein -
  J5D27_RS05455 (J5D27_05455) - 1175558..1178431 (-) 2874 WP_249936591.1 DUF3519 domain-containing protein -
  J5D27_RS05460 (J5D27_05460) - 1178400..1178600 (+) 201 WP_209525551.1 hypothetical protein -
  J5D27_RS05465 (J5D27_05465) - 1178597..1178854 (+) 258 WP_209525553.1 hypothetical protein -
  J5D27_RS05470 (J5D27_05470) - 1178843..1179613 (-) 771 WP_025449291.1 HP1117 family Sel1-like repeat protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 75869.27 Da        Isoelectric Point: 6.6483

>NTDB_id=480216 J5D27_RS05445 WP_209525546.1 1172726..1174702(-) (uvrB) [Helicobacter pylori strain MT5111]
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFF
PHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKI
KVGEKHAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNET
PFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNK
LELELSQKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKIT
QSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNL
DFEEAMRLRDEIAQLRTL

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=480216 J5D27_RS05445 WP_209525546.1 1172726..1174702(-) (uvrB) [Helicobacter pylori strain MT5111]
ATGCCTTTATTTGATTTAAAAAGCCCTTATCCACCAGCAGGCGATCAGCCCCAAGCCATAGAAGCTTTAACGAAAAGCTT
GAAAAATAACAACCATTATCAAACTCTAGTGGGCGTTACAGGGAGCGGTAAGACTTACACGATGGCCAATATCATCGCTC
AAACCAATAAACCCGCTTTGATCATGAGCCATAATAAGACCTTATGCGCGCAGCTTTATAGCGAGTTTAAGGCGTTTTTC
CCGCATAATAGGGTGGAGTATTTTATCTCCCACTTTGATTACTACCAGCCTGAGAGCTATATCCCTAGGAGGGATTTATT
CATTGAAAAAGACAGCTCTATTAACGATGACTTGGAGCGTTTGAGATTGAGCGCGACCACTTCGCTTTTAGGTTATGATG
ATGTGATCGTGATAGCGAGCGTTTCGGCTAATTATGGTTTGGGTAACCCTGAAGAATATTTGAAAGTCATGGAAAAAATC
AAAGTGGGCGAGAAGCACGCTTACAAGAGCTTTTTATTAAAGCTGGTGGAAATGGGTTATAGCCGTAATGAAGTGGTGTT
TGATAGGGGGAGCTTTAGAGCGACAGGGGAATGCGTGGATATTTTCCCCGCTTATAATGACGCTGAATTTATTAGGATTG
AATTTTTTGGCGATGAGATAGAAAGGATTGCTGTCTTTGACGCTTTAGAAAGAAATGAAATCAAGCGCTTGGATTCTGTC
ATGCTTTATGCGGCCAGTCAGTTTGCCGTAGGGAGCGAGAGGTTGAATTTAGCCATTAAAAGTATTGAAGATGAACTCGC
TTTAAGATTGAAATTTTTTAAAGAGCAGGATAAAATGCTTGAATACAACCGCCTCAAACAACGCACCGAGCATGATTTAG
AAATGATTAGCGCGACCGGTGTGTGTAAGGGCATTGAAAATTACGCACGCCATTTTACGGGTAAAGCCCCTAACGAAACG
CCTTTTTGTTTGTTTGATTATTTAGGGATATTTGAGCGGGAATTTTTAGTCATTGTGGATGAAAGCCATGTGAGTTTGCC
GCAGTTTGGGGGGATGTATGCAGGGGATATGAGCAGGAAAAGCGTTTTAGTGGAATATGGTTTTAGATTGCCTAGCGCTT
TAGACAACCGCCCTTTAAAGTTTGATGAATTTATCCATAAAAATTGCCAGTTCCTTTTTGTGTCCGCTACGCCCAATAAG
CTAGAATTAGAGCTTTCTCAAAAGAATGTCGCTGAGCAAATCATTCGCCCTACAGGGCTTTTAGACCCCAAATTTGAAGT
GCGAGACAGCGATAAGCAAGTCCAGGATTTATTTGATGAAATCAAGTCAGTGGTGGCCAGAGGTGAAAGGGTGCTCATCA
CCACGCTCACTAAAAAAATGGCAGAAGAATTGTGTAAATATTATGCTGAATGGGGCTTGAAAGTGCGTTACATGCATAGT
GAAATTGATGCGATTGAAAGGAATCACATTATCCGCTCTTTAAGGCTTAAAGAATTTGACATTTTAATAGGGATCAATCT
TTTAAGAGAGGGGTTGGATTTGCCTGAAGTTTCTTTAGTAGCGATCATGGATGCGGATAAAGAGGGGTTTTTAAGGAGCG
AAACAAGCCTCATTCAAACCATGGGGCGAGCCGCTAGAAACGCTAATGGTAAGGTTTTATTATACGCTAAAAAGATCACT
CAAAGCATGCAAAAAGCCTTTGAGATCACGAGTTACAGGCGCGCCAAGCAAGAAGAGTTTAATAAAATCCATAACATCAC
CCCTAAAACCGTTACGCGTGCTTTAGAAGAGGAGTTGAAATTAAGAGACGATGAGATTAAAATCGCTAAAGCTTTAAAAA
AGGACAAAATGCCTAAAAGCGAAAGGGAAAAAATCATTAAAGAATTGGATAAAAAAATGCGAGAATGCGCGAAAAATTTG
GATTTTGAAGAAGCGATGCGTTTGAGAGACGAAATCGCTCAATTAAGAACGCTTTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(554-595)

UvrB/uvrC motif (UVR)

(623-657)

Type III restriction enzyme, res subunit (ResIII)

(15-137)

Helicase conserved C-terminal domain (Helicase_C)

(443-547)

UvrB interaction domain (UvrB_inter)

(159-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

49.623

100

0.5
  uvrB Streptococcus pneumoniae TIGR4

49.623

100

0.5
  uvrB Streptococcus pneumoniae D39

49.623

100

0.5