NTDB

Overview

Name	comYD	Type	Machinery gene
Locus tag	IBL27_RS00985	Genome accession	NZ_CP061071
Coordinates	205173..205577 (+)	Length	134 a.a.
NCBI ID	WP_002279330.1	Uniprot ID	-
Organism	Streptococcus mutans B04Sm5
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 200173..210577

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBL27_RS00965 (IBL27_00965)	-	202449..202832 (+)	384	WP_002263434.1	DUF1033 family protein	-
IBL27_RS00970 (IBL27_00970)	comYA	202964..203905 (+)	942	WP_002263435.1	competence type IV pilus ATPase ComGA	Machinery gene
IBL27_RS00975 (IBL27_00975)	comYB	203841..204872 (+)	1032	WP_255264529.1	competence type IV pilus assembly protein ComGB	Machinery gene
IBL27_RS00980 (IBL27_00980)	comYC	204872..205186 (+)	315	WP_002279331.1	competence type IV pilus major pilin ComGC	Machinery gene
IBL27_RS00985 (IBL27_00985)	comYD	205173..205577 (+)	405	WP_002279330.1	competence type IV pilus minor pilin ComGD	Machinery gene
IBL27_RS00990 (IBL27_00990)	comYE	205549..205842 (+)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
IBL27_RS00995 (IBL27_00995)	comYF	205829..206263 (+)	435	WP_002264245.1	competence type IV pilus minor pilin ComGF	Machinery gene
IBL27_RS01000 (IBL27_01000)	comYG	206241..206630 (+)	390	WP_002263441.1	competence type IV pilus minor pilin ComGG	Machinery gene
IBL27_RS01005 (IBL27_01005)	comYH	206685..207638 (+)	954	WP_002309243.1	class I SAM-dependent methyltransferase	Machinery gene
IBL27_RS01010 (IBL27_01010)	-	207697..208896 (+)	1200	WP_002265895.1	acetate kinase	-
IBL27_RS01015 (IBL27_01015)	-	209449..209694 (+)	246	WP_002265894.1	helix-turn-helix transcriptional regulator	-
IBL27_RS01020 (IBL27_01020)	-	209663..210103 (+)	441	WP_002265893.1	hypothetical protein	-

Sequence

Protein

Download Length: 134 a.a. Molecular weight: 15444.77 Da Isoelectric Point: 9.5619

                                >NTDB_id=480218 IBL27_RS00985 WP_002279330.1 205173..205577(+) (comYD) [Streptococcus mutans B04Sm5]

MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEERIFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL

KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

Download Length: 405 bp

                                >NTDB_id=480218 IBL27_RS00985 WP_002279330.1 205173..205577(+) (comYD) [Streptococcus mutans B04Sm5]

ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC

AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCGTATCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC

AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATCTCAAATGGTGTTGAAGTACTT

AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA

ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA

GTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYD	Streptococcus mutans UA140	99.254	100	0.993
comYD	Streptococcus mutans UA159	99.254	100	0.993
comYD	Streptococcus gordonii str. Challis substr. CH1	51.163	96.269	0.493
comGD/cglD	Streptococcus mitis NCTC 12261	50.388	96.269	0.485
comGD/cglD	Streptococcus pneumoniae Rx1	50	95.522	0.478
comGD/cglD	Streptococcus pneumoniae D39	50	95.522	0.478
comGD/cglD	Streptococcus pneumoniae R6	50	95.522	0.478
comGD/cglD	Streptococcus pneumoniae TIGR4	49.219	95.522	0.47
comGD/cglD	Streptococcus mitis SK321	49.219	95.522	0.47
comGD	Lactococcus lactis subsp. cremoris KW2	38.636	98.507	0.381

Detailed information NTG0480218