Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   J5D27_RS05680 Genome accession   NZ_CP071981
Coordinates   1223594..1224367 (+) Length   257 a.a.
NCBI ID   WP_209525583.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5111     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1218594..1229367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D27_RS05675 (J5D27_05675) hopL 1219897..1223580 (+) 3684 WP_209525581.1 outer membrane protein -
  J5D27_RS05680 (J5D27_05680) proC 1223594..1224367 (+) 774 WP_209525583.1 pyrroline-5-carboxylate reductase Machinery gene
  J5D27_RS05685 (J5D27_05685) - 1224395..1224928 (+) 534 WP_000549913.1 Fic/DOC family protein -
  J5D27_RS05690 (J5D27_05690) ybeY 1225013..1225438 (-) 426 WP_097707090.1 rRNA maturation RNase YbeY -
  J5D27_RS05695 (J5D27_05695) - 1225492..1225986 (-) 495 WP_097707089.1 flavodoxin -
  J5D27_RS05700 (J5D27_05700) - 1226078..1226659 (-) 582 WP_198994700.1 DedA family protein -
  J5D27_RS05705 (J5D27_05705) ccoS 1226783..1226980 (+) 198 WP_001090947.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  J5D27_RS05710 (J5D27_05710) - 1227008..1227982 (+) 975 WP_209525585.1 NAD(P)/FAD-dependent oxidoreductase -
  J5D27_RS05715 (J5D27_05715) - 1227989..1229150 (-) 1162 Protein_1130 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28203.75 Da        Isoelectric Point: 7.6881

>NTDB_id=480218 J5D27_RS05680 WP_209525583.1 1223594..1224367(+) (proC) [Helicobacter pylori strain MT5111]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVVPSISEKAFSIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASGLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPETIMEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMHL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=480218 J5D27_RS05680 WP_209525583.1 1223594..1224367(+) (proC) [Helicobacter pylori strain MT5111]
ATGGAAATCTTACAATTCATCGGCTATGGGAACATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAAATCACCGGAAGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCCCAAATCG
TGCCTTATAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTATTATTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTTTGAGCGCTTTAGCTGGCGTGAATTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCTAACATTGCGAGCAAGTTCGCTCTTTCTTCTACGGCGGTGTGTGAAAAATCGGTTGTGC
CTTCAATAAGCGAAAAGGCTTTTAGTATTATTGAAAGTTTTGGGAATTGCGTGCGAGTGGGAAACGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGTGCGCTCGCTTTTTTAAGCTTGGTAGCGAGCGGTTTGAAAGACGCCGGCATCAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAGTTGGTAAAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGACGATCATGGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGAGGAGCGTTTATAGAAGCATGTCATGAAAGCGTGAAAAAAATGCACCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366