Detailed information NTG0480220

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: IBL27_RS00995
• Genome accession: NZ_CP061071
• Coordinates: 205829..206263 (+)
• Length: 144 a.a.
• NCBI ID: WP_002264245.1
• Uniprot ID: -
• Organism: Streptococcus mutans B04Sm5
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 200829..211263

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBL27_RS00965 (IBL27_00965)	-	202449..202832 (+)	384	WP_002263434.1	DUF1033 family protein	-
IBL27_RS00970 (IBL27_00970)	comYA	202964..203905 (+)	942	WP_002263435.1	competence type IV pilus ATPase ComGA	Machinery gene
IBL27_RS00975 (IBL27_00975)	comYB	203841..204872 (+)	1032	WP_255264529.1	competence type IV pilus assembly protein ComGB	Machinery gene
IBL27_RS00980 (IBL27_00980)	comYC	204872..205186 (+)	315	WP_002279331.1	competence type IV pilus major pilin ComGC	Machinery gene
IBL27_RS00985 (IBL27_00985)	comYD	205173..205577 (+)	405	WP_002279330.1	competence type IV pilus minor pilin ComGD	Machinery gene
IBL27_RS00990 (IBL27_00990)	comYE	205549..205842 (+)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
IBL27_RS00995 (IBL27_00995)	comYF	205829..206263 (+)	435	WP_002264245.1	competence type IV pilus minor pilin ComGF	Machinery gene
IBL27_RS01000 (IBL27_01000)	comYG	206241..206630 (+)	390	WP_002263441.1	competence type IV pilus minor pilin ComGG	Machinery gene
IBL27_RS01005 (IBL27_01005)	comYH	206685..207638 (+)	954	WP_002309243.1	class I SAM-dependent methyltransferase	Machinery gene
IBL27_RS01010 (IBL27_01010)	-	207697..208896 (+)	1200	WP_002265895.1	acetate kinase	-
IBL27_RS01015 (IBL27_01015)	-	209449..209694 (+)	246	WP_002265894.1	helix-turn-helix transcriptional regulator	-
IBL27_RS01020 (IBL27_01020)	-	209663..210103 (+)	441	WP_002265893.1	hypothetical protein	-
IBL27_RS01025 (IBL27_01025)	-	210156..210818 (+)	663	WP_002263446.1	type II CAAX endopeptidase family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16252.72 Da
• Isoelectric Point: 9.9512

>NTDB_id=480220 IBL27_RS00995 WP_002264245.1 205829..206263(+) (comYF) [Streptococcus mutans B04Sm5]
MLKSKLKAFTLLECLLALLVIAGSVSVYNGLTKAISSNIHYLSKNQEDAWLLFCQQFRSELEGTTLQKLDSNKLYVQKNN
QSLAFGKSKASDFRKTNSDGRGYQPMLTEIKAANFSQSGKIIKLDLTFKDGLERTFVYAFHEKN

Nucleotide

• Length: 435 bp

>NTDB_id=480220 IBL27_RS00995 WP_002264245.1 205829..206263(+) (comYF) [Streptococcus mutans B04Sm5]
TTGTTAAAAAGTAAATTGAAAGCTTTCACACTTTTAGAGTGTCTCCTTGCTTTGCTTGTCATTGCTGGTAGTGTATCTGT
TTATAATGGTCTAACTAAAGCTATTAGTAGTAATATTCATTACTTATCAAAAAATCAAGAAGATGCTTGGTTACTTTTTT
GTCAGCAATTTCGGTCTGAACTTGAAGGAACGACTTTGCAAAAATTGGATAGCAATAAGCTTTATGTTCAAAAAAATAAT
CAAAGTTTAGCCTTTGGTAAATCAAAAGCAAGTGATTTTAGAAAGACTAACAGTGATGGACGTGGTTATCAGCCTATGTT
GACGGAGATCAAAGCTGCTAATTTTAGTCAATCAGGAAAAATTATTAAATTAGACCTTACTTTCAAAGATGGTTTAGAGA
GGACTTTTGTTTATGCTTTTCATGAAAAAAATTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (36-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	100	100	1
comYF	Streptococcus mutans UA159	99.306	100	0.993
comGF	Lactococcus lactis subsp. cremoris KW2	43.972	97.917	0.431
comGF/cglF	Streptococcus pneumoniae Rx1	40.299	93.056	0.375
comGF/cglF	Streptococcus pneumoniae D39	40.299	93.056	0.375
comGF/cglF	Streptococcus pneumoniae R6	40.299	93.056	0.375
comGF/cglF	Streptococcus pneumoniae TIGR4	40.299	93.056	0.375
comGF/cglF	Streptococcus mitis NCTC 12261	38.806	93.056	0.361