Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA/cilD   Type   Machinery gene
Locus tag   IBB94_RS08805 Genome accession   NZ_CP061024
Coordinates   1712784..1713725 (-) Length   313 a.a.
NCBI ID   WP_207560109.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 13498     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1707784..1718725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBB94_RS08765 (IBB94_08775) - 1707860..1709053 (-) 1194 WP_014608740.1 acetate kinase -
  IBB94_RS08770 (IBB94_08780) comYH 1709109..1710065 (-) 957 WP_207560110.1 class I SAM-dependent methyltransferase Machinery gene
  IBB94_RS08775 (IBB94_08785) comGG 1710110..1710427 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  IBB94_RS08780 (IBB94_08790) comYF 1710405..1710842 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  IBB94_RS08785 (IBB94_08795) comGE 1710826..1711119 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  IBB94_RS08790 (IBB94_08800) comYD 1711091..1711519 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  IBB94_RS08795 (IBB94_08805) comYC 1711479..1711805 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  IBB94_RS08800 (IBB94_08810) comYB 1711802..1712902 (-) 1101 WP_207560111.1 competence type IV pilus assembly protein ComGB Machinery gene
  IBB94_RS08805 (IBB94_08815) comGA/cglA/cilD 1712784..1713725 (-) 942 WP_207560109.1 competence type IV pilus ATPase ComGA Machinery gene
  IBB94_RS08810 (IBB94_08820) - 1713806..1714168 (-) 363 WP_014622006.1 DUF1033 family protein -
  IBB94_RS08815 (IBB94_08825) rpoC 1714326..1717964 (-) 3639 WP_011226631.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35443.64 Da        Isoelectric Point: 6.4142

>NTDB_id=479789 IBB94_RS08805 WP_207560109.1 1712784..1713725(-) (comGA/cglA/cilD) [Streptococcus thermophilus strain 13498]
MVTEFAKEMIKNADSCGAQDIYVIPRQDNYELYMRVGQERRLIDVYRPDFMASLIGHFKFVAGMMVGEKRRSQLGSCDYD
CGDGHLVSLRLSTVGDYRGLESLVIRILHSERRELVYWNQGIHPIKDALDYRGLYLFAGPVGSGKTTLMHELVQEHFKGQ
QVISIEDPVEIKQDNVLQLQVNQAIDMTYDSLIKLSLRHRPDVLIIGEIRDKETARAVIRASLIGVTVLSTIHAKSIAGV
YERLLDLGVDKSELDNALQGIAYMRLIKGGGMIDFARENFQNHSSTNWNQQLEGLVKQGCLTERDIQGEKIKD

Nucleotide


Download         Length: 942 bp        

>NTDB_id=479789 IBB94_RS08805 WP_207560109.1 1712784..1713725(-) (comGA/cglA/cilD) [Streptococcus thermophilus strain 13498]
ATGGTAACAGAATTTGCTAAGGAAATGATCAAAAATGCTGATAGTTGTGGGGCTCAAGACATCTATGTCATTCCACGTCA
GGATAATTATGAGCTCTATATGCGAGTCGGGCAAGAGAGGAGATTGATTGATGTATATCGGCCTGATTTCATGGCTAGTC
TTATTGGTCACTTTAAATTTGTGGCGGGAATGATGGTGGGTGAGAAGCGTAGGAGTCAACTGGGTTCATGTGACTATGAT
TGTGGTGACGGTCACTTGGTTTCTCTGCGTTTATCAACTGTTGGAGACTATCGAGGTTTGGAGAGCTTGGTTATCCGTAT
CCTACATTCCGAACGTCGAGAATTAGTGTATTGGAATCAAGGAATCCATCCTATTAAGGATGCCTTGGATTATAGAGGAC
TGTATCTCTTTGCGGGTCCCGTAGGTTCTGGGAAGACCACACTTATGCATGAGTTGGTTCAGGAGCATTTTAAGGGGCAG
CAGGTAATTTCGATTGAGGATCCTGTTGAAATCAAACAGGATAATGTCTTGCAACTCCAGGTTAATCAGGCGATTGATAT
GACCTATGATAGTTTGATTAAGCTATCTCTACGTCACCGTCCAGATGTTTTGATTATTGGGGAGATTCGGGATAAGGAGA
CTGCCCGGGCAGTTATTAGAGCTAGTCTAATAGGTGTAACTGTTCTTTCAACTATTCATGCTAAGAGTATTGCTGGCGTT
TACGAACGTCTCTTGGACCTTGGCGTAGATAAGTCTGAGTTGGATAATGCTCTACAAGGCATTGCCTACATGCGTTTGAT
CAAGGGAGGAGGTATGATTGATTTTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAG
GTTTGGTTAAACAAGGATGTCTCACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.273

99.361

0.649
  comYA Streptococcus mutans UA159

64.217

100

0.642
  comYA Streptococcus mutans UA140

64.217

100

0.642
  comGA/cglA/cilD Streptococcus pneumoniae D39

63.987

99.361

0.636
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

63.987

99.361

0.636
  comGA/cglA/cilD Streptococcus pneumoniae R6

63.987

99.361

0.636
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

63.987

99.361

0.636
  comYA Streptococcus gordonii str. Challis substr. CH1

62.62

100

0.626
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.218

99.681

0.61
  comGA Lactococcus lactis subsp. cremoris KW2

50.804

99.361

0.505
  comGA Latilactobacillus sakei subsp. sakei 23K

38.667

95.847

0.371