Detailed information NTG0479786

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: IBB94_RS08790
• Genome accession: NZ_CP061024
• Coordinates: 1711091..1711519 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 13498
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1706091..1716519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBB94_RS08750 (IBB94_08760)	-	1706229..1706672 (-)	444	WP_084829882.1	CAAX protease	-
IBB94_RS10160	-	1706746..1707171 (-)	426	WP_087010196.1	CPBP family intramembrane glutamic endopeptidase	-
IBB94_RS08760 (IBB94_08770)	-	1707414..1707611 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
IBB94_RS08765 (IBB94_08775)	-	1707860..1709053 (-)	1194	WP_014608740.1	acetate kinase	-
IBB94_RS08770 (IBB94_08780)	comYH	1709109..1710065 (-)	957	WP_207560110.1	class I SAM-dependent methyltransferase	Machinery gene
IBB94_RS08775 (IBB94_08785)	comGG	1710110..1710427 (-)	318	WP_011681685.1	competence type IV pilus minor pilin ComGG	-
IBB94_RS08780 (IBB94_08790)	comYF	1710405..1710842 (-)	438	WP_011681686.1	competence type IV pilus minor pilin ComGF	Machinery gene
IBB94_RS08785 (IBB94_08795)	comGE	1710826..1711119 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
IBB94_RS08790 (IBB94_08800)	comYD	1711091..1711519 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
IBB94_RS08795 (IBB94_08805)	comYC	1711479..1711805 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
IBB94_RS08800 (IBB94_08810)	comYB	1711802..1712902 (-)	1101	WP_207560111.1	competence type IV pilus assembly protein ComGB	Machinery gene
IBB94_RS08805 (IBB94_08815)	comGA/cglA/cilD	1712784..1713725 (-)	942	WP_207560109.1	competence type IV pilus ATPase ComGA	Machinery gene
IBB94_RS08810 (IBB94_08820)	-	1713806..1714168 (-)	363	WP_014622006.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=479786 IBB94_RS08790 WP_011226626.1 1711091..1711519(-) (comYD) [Streptococcus thermophilus strain 13498]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=479786 IBB94_RS08790 WP_011226626.1 1711091..1711519(-) (comYD) [Streptococcus thermophilus strain 13498]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCGAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38