Detailed information NTG0479788

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: IBB94_RS08800
• Genome accession: NZ_CP061024
• Coordinates: 1711802..1712902 (-)
• Length: 366 a.a.
• NCBI ID: WP_207560111.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 13498
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1706802..1717902

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBB94_RS08760 (IBB94_08770)	-	1707414..1707611 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
IBB94_RS08765 (IBB94_08775)	-	1707860..1709053 (-)	1194	WP_014608740.1	acetate kinase	-
IBB94_RS08770 (IBB94_08780)	comYH	1709109..1710065 (-)	957	WP_207560110.1	class I SAM-dependent methyltransferase	Machinery gene
IBB94_RS08775 (IBB94_08785)	comGG	1710110..1710427 (-)	318	WP_011681685.1	competence type IV pilus minor pilin ComGG	-
IBB94_RS08780 (IBB94_08790)	comYF	1710405..1710842 (-)	438	WP_011681686.1	competence type IV pilus minor pilin ComGF	Machinery gene
IBB94_RS08785 (IBB94_08795)	comGE	1710826..1711119 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
IBB94_RS08790 (IBB94_08800)	comYD	1711091..1711519 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
IBB94_RS08795 (IBB94_08805)	comYC	1711479..1711805 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
IBB94_RS08800 (IBB94_08810)	comYB	1711802..1712902 (-)	1101	WP_207560111.1	competence type IV pilus assembly protein ComGB	Machinery gene
IBB94_RS08805 (IBB94_08815)	comGA/cglA/cilD	1712784..1713725 (-)	942	WP_207560109.1	competence type IV pilus ATPase ComGA	Machinery gene
IBB94_RS08810 (IBB94_08820)	-	1713806..1714168 (-)	363	WP_014622006.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41789.94 Da
• Isoelectric Point: 10.1952

>NTDB_id=479788 IBB94_RS08800 WP_207560111.1 1711802..1712902(-) (comYB) [Streptococcus thermophilus strain 13498]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMGVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRDLGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=479788 IBB94_RS08800 WP_207560111.1 1711802..1712902(-) (comYB) [Streptococcus thermophilus strain 13498]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTCATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGGGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAGAAGTCTAAACTCTTCCGTGATCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCAGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.094	93.443	0.505
comYB	Streptococcus mutans UA159	54.094	93.443	0.505
comYB	Streptococcus gordonii str. Challis substr. CH1	50.585	93.443	0.473
comGB/cglB	Streptococcus mitis NCTC 12261	49.849	90.437	0.451
comGB/cglB	Streptococcus mitis SK321	49.091	90.164	0.443
comGB/cglB	Streptococcus pneumoniae Rx1	48.788	90.164	0.44
comGB/cglB	Streptococcus pneumoniae D39	48.788	90.164	0.44
comGB/cglB	Streptococcus pneumoniae R6	48.788	90.164	0.44
comGB/cglB	Streptococcus pneumoniae TIGR4	48.788	90.164	0.44
comGB	Lactococcus lactis subsp. cremoris KW2	45.152	90.164	0.407