Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   JS608_RS15880 Genome accession   NZ_CP071042
Coordinates   3207650..3208345 (-) Length   231 a.a.
NCBI ID   WP_003152646.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3202650..3213345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS15850 (JS608_03172) - 3202665..3203468 (-) 804 WP_007408168.1 M23 family metallopeptidase -
  JS608_RS15855 (JS608_03173) minD 3203596..3204399 (-) 804 WP_003152655.1 septum site-determining protein MinD -
  JS608_RS15860 (JS608_03174) minC 3204402..3205082 (-) 681 WP_003152653.1 septum site-determining protein MinC -
  JS608_RS15865 (JS608_03175) mreD 3205136..3205654 (-) 519 WP_003152650.1 rod shape-determining protein MreD -
  JS608_RS15870 (JS608_03176) mreC 3205651..3206514 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  JS608_RS15875 (JS608_03177) mreB 3206545..3207558 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  JS608_RS15880 (JS608_03178) ysxA/radC 3207650..3208345 (-) 696 WP_003152646.1 DNA repair protein RadC Machinery gene
  JS608_RS15885 (JS608_03179) - 3208377..3208946 (-) 570 WP_014305513.1 nucleoside triphosphate pyrophosphatase -
  JS608_RS15890 (JS608_03180) - 3209087..3210088 (-) 1002 WP_069013529.1 SPOR domain-containing protein -
  JS608_RS15895 (JS608_03181) comC 3210215..3210967 (-) 753 WP_003152643.1 A24 family peptidase Machinery gene
  JS608_RS15900 (JS608_03182) - 3211107..3212399 (-) 1293 WP_069013528.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26094.33 Da        Isoelectric Point: 9.1909

>NTDB_id=475720 JS608_RS15880 WP_003152646.1 3207650..3208345(-) (ysxA/radC) [Bacillus amyloliquefaciens isolate ELA1901024]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=475720 JS608_RS15880 WP_003152646.1 3207650..3208345(-) (ysxA/radC) [Bacillus amyloliquefaciens isolate ELA1901024]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGAACGGTGAAGGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCATAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

88.312

100

0.883
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429