Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   XHV734_RS05350 Genome accession   NZ_CP060399
Coordinates   1297364..1298623 (-) Length   419 a.a.
NCBI ID   WP_180313588.1    Uniprot ID   A0A6V7F4X4
Organism   Xanthomonas hortorum pv. vitians strain LM16734     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1292364..1303623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XHV734_RS05320 (XHV734_1242) - 1292870..1294204 (+) 1335 WP_074058086.1 HAMP domain-containing sensor histidine kinase -
  XHV734_RS05325 (XHV734_1244) - 1294340..1294642 (-) 303 WP_074058085.1 type II toxin-antitoxin system RelE/ParE family toxin -
  XHV734_RS05330 (XHV734_1245) - 1294639..1294824 (-) 186 WP_006448358.1 hypothetical protein -
  XHV734_RS05335 (XHV734_1246) - 1294922..1295323 (-) 402 WP_074058084.1 SymE family type I addiction module toxin -
  XHV734_RS05340 (XHV734_1248) coaE 1295857..1296480 (-) 624 WP_154844506.1 dephospho-CoA kinase -
  XHV734_RS05345 (XHV734_1249) - 1296494..1297357 (-) 864 WP_002812278.1 A24 family peptidase -
  XHV734_RS05350 (XHV734_1250) pilC 1297364..1298623 (-) 1260 WP_180313588.1 type II secretion system F family protein Machinery gene
  XHV734_RS05355 (XHV734_1251) pilA2 1298977..1299405 (+) 429 WP_180313578.1 pilin Machinery gene
  XHV734_RS05360 (XHV734_1252) pilB 1299658..1301394 (+) 1737 WP_187433766.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XHV734_RS05365 (XHV734_1253) pilR 1301736..1303190 (-) 1455 WP_174555994.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46053.55 Da        Isoelectric Point: 10.2301

>NTDB_id=475720 XHV734_RS05350 WP_180313588.1 1297364..1298623(-) (pilC) [Xanthomonas hortorum pv. vitians strain LM16734]
MSVARSAIKKQPVDRNTSMLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAIVVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLMMTVGSIVGFIFAYKRSPRMQHALDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=475720 XHV734_RS05350 WP_180313588.1 1297364..1298623(-) (pilC) [Xanthomonas hortorum pv. vitians strain LM16734]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACTAGCATGCTGCAGACCTTCGTTTGGGAAGG
AGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCAAAGCCCCTGTTCGGAGCGGCGGGCAAGAAAATTACCGCCAAAGAC
ATTGCGTTCTTCAGCCGTCAGATGGCGACGATGATGAAGTCAGGCGTGCCCATCGTCAGTTCTCTGGAGATCATCGGCGA
GGGACACAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACTGACATTGAGGGCGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTCCAGTTTGACGAGCTCTACCGCAATCTTGTCCGCGCGGGCGAAGGTGCCGGCGTATTGGAG
ACAGTCCTAGATACGGTCGCCACGTACAAAGAGAACATTGAAGCCCTCAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCCGTGGCAATCGTTGTAAGTGCGATTTTGCTTATCTTCGTGGTACCTCAGTTCGAAGAGGTATTCA
AGAATTTCGGCGCTGAACTACCGGCATTCACTCAGCTTCTCGTCAATGCCTCGCGCTTTATGGTCAGCTATTGGTGGTTG
ATGCTGATGATGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGCACTTGA
TCGGTTGATCCTCAAGGTCCCCGTGATTGGGCAGATCATGCACAACAGCGCAATTGCACGTTTTGCACGCACTACTGCCG
TAACGTTCAAGGCGGGCGTACCTCTCGTCGAGGCACTTGGGATCGTTGCAGGTGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTACTGCGGATGCGCGACGACGTATCGGTCGGCTATCCGGTGAACATGGCGATGAAACAAGTGAATCTGTTTCCGCA
CATGGTGGTGCAGATGACCGCAATTGGCGAAGAAGCAGGCGCTTTGGACACGATGCTGTTCAAGGTAGCTGACTACTTCG
AGGAGGAAGTCAACAACGCCGTGGACGCGCTCAGCAGCCTGCTTGAACCACTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7F4X4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.956

96.897

0.513
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Acinetobacter baylyi ADP1

51.111

96.659

0.494
  pilC Acinetobacter baumannii D1279779

50.37

96.659

0.487
  pilG Neisseria gonorrhoeae MS11

43.358

95.227

0.413
  pilG Neisseria meningitidis 44/76-A

42.857

95.227

0.408
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

39

95.465

0.372
  pilC Thermus thermophilus HB27

39

95.465

0.372