Detailed information NTG0475723

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: XHV734_RS05365
• Genome accession: NZ_CP060399
• Coordinates: 1301736..1303190 (-)
• Length: 484 a.a.
• NCBI ID: WP_174555994.1
• Uniprot ID: -
• Organism: Xanthomonas hortorum pv. vitians strain LM16734
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1296736..1308190

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XHV734_RS05350 (XHV734_1250)	pilC	1297364..1298623 (-)	1260	WP_180313588.1	type II secretion system F family protein	Machinery gene
XHV734_RS05355 (XHV734_1251)	pilA2	1298977..1299405 (+)	429	WP_180313578.1	pilin	Machinery gene
XHV734_RS05360 (XHV734_1252)	pilB	1299658..1301394 (+)	1737	WP_187433766.1	type IV-A pilus assembly ATPase PilB	Machinery gene
XHV734_RS05365 (XHV734_1253)	pilR	1301736..1303190 (-)	1455	WP_174555994.1	sigma-54 dependent transcriptional regulator	Regulator
XHV734_RS05370 (XHV734_1254)	-	1303276..1304889 (-)	1614	WP_006448368.1	HAMP domain-containing sensor histidine kinase	-
XHV734_RS05375 (XHV734_1255)	sucC	1305122..1306291 (+)	1170	WP_006450728.1	ADP-forming succinate--CoA ligase subunit beta	-
XHV734_RS05380 (XHV734_1256)	sucD	1306316..1307191 (+)	876	WP_006450729.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 484 a.a.
• Molecular weight: 52490.13 Da
• Isoelectric Point: 6.5126

>NTDB_id=475723 XHV734_RS05365 WP_174555994.1 1301736..1303190(-) (pilR) [Xanthomonas hortorum pv. vitians strain LM16734]
MGPNPDDNCRPSSRWAIVRTMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEISKQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERSGDLPQLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISAS
DLRLPAHGGHRLAASPGSAAIEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKK
LGME

Nucleotide

• Length: 1455 bp

>NTDB_id=475723 XHV734_RS05365 WP_174555994.1 1301736..1303190(-) (pilR) [Xanthomonas hortorum pv. vitians strain LM16734]
GTGGGCCCAAACCCCGACGACAATTGTCGTCCGTCATCGCGCTGGGCTATCGTGCGCACCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGGATGGGCCTGCGCATCAGCACTG
CTGCCAATCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAACCCCTACGACCTGTGCCTGACCGACATGCGCCTGCCAGAC
GGCAACGGCATCGAACTGGTCACCGAAATCTCAAAGCAATATCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCGGTGGAAGCACTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGTGGACATCAGCGTGCTGCGCG
GCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCGCCGCCGCCGCCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCACGCAGCCAGGCGCCGGTCTATAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTGAACTGCGGCGCCATTCCCGCCGAATTGATGGAGAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCTGGCCTGTTCCAGGCCGCGCATGGCGGTACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGCT
GCAGATGCAGGTCAAACTGCTGCGCGCCATCCAGGAGAAATCGGTGCGCCCGGTCGGCGCCTCCACCGAATCGCTGGTGG
ACGTGCGCATCCTCTCGGCCACCCACAAGGACCTCGGCGACCTGGTCTCCGACGGCCGTTTTCGTCACGACCTGTACTAC
CGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCAGCGGCGACCTGCCGCAACTGGCCGCCGCCATTAT
CGCGCGCCTGGCACGCAGCCACGGCCGTCCGATTCCGCTGCTGACCCAATCCGCCCTCGACGCGCTGGACACATACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCAGC
GACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCCATCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAGCAACTCGAGCGCGCCGCGATCCAGAAAGCGCTGG
AAGAAAACCGCTGGAACAAGACCAGAACCGCCGCGCAGCTAGGCATCACGTTTCGTGCGCTGCGCTACAAGCTCAAGAAG
TTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (441-481)

• Response regulator receiver domain (Response_reg) (28-135)

• Sigma-54 interaction domain (Sigma54_activat) (162-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.283	95.661	0.605
pilR	Acinetobacter baumannii strain A118	49.138	95.868	0.471