Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H7683_RS14420 Genome accession   NZ_CP060288
Coordinates   3089108..3090328 (-) Length   406 a.a.
NCBI ID   WP_181563849.1    Uniprot ID   -
Organism   Pseudomonas mendocina strain CPS5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3084108..3095328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7683_RS14380 (H7683_14375) - 3084318..3084491 (-) 174 WP_013714021.1 DUF3094 family protein -
  H7683_RS14385 (H7683_14380) - 3084698..3085252 (-) 555 WP_017361400.1 MOSC domain-containing protein -
  H7683_RS14390 (H7683_14385) - 3085249..3085878 (-) 630 WP_179590646.1 DUF1780 domain-containing protein -
  H7683_RS14395 (H7683_14390) - 3086087..3086776 (+) 690 WP_209449213.1 energy-coupling factor ABC transporter permease -
  H7683_RS14400 (H7683_14395) - 3086883..3087098 (+) 216 WP_209449214.1 hypothetical protein -
  H7683_RS14405 (H7683_14400) yacG 3087169..3087363 (-) 195 WP_013714026.1 DNA gyrase inhibitor YacG -
  H7683_RS14410 (H7683_14405) coaE 3087360..3087968 (-) 609 WP_209449215.1 dephospho-CoA kinase -
  H7683_RS14415 (H7683_14410) pilD 3088238..3089104 (-) 867 WP_209449216.1 A24 family peptidase Machinery gene
  H7683_RS14420 (H7683_14415) pilC 3089108..3090328 (-) 1221 WP_181563849.1 type II secretion system F family protein Machinery gene
  H7683_RS14425 (H7683_14420) pilB 3090332..3092032 (-) 1701 WP_209451037.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H7683_RS24590 (H7683_14425) pilA 3092261..3092446 (+) 186 WP_143501533.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H7683_RS14435 (H7683_14430) - 3092464..3092892 (+) 429 WP_143501531.1 hypothetical protein -
  H7683_RS14440 (H7683_14435) - 3093046..3093855 (+) 810 WP_244973822.1 hypothetical protein -
  H7683_RS14445 (H7683_14440) - 3093917..3094699 (+) 783 WP_244973823.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44007.67 Da        Isoelectric Point: 9.7131

>NTDB_id=475380 H7683_RS14420 WP_181563849.1 3089108..3090328(-) (pilC) [Pseudomonas mendocina strain CPS5]
MAEKALKTSVFAWEGTDRKGGKVKGELSGQSPALVKAQLRKQGINPIKVRKKAVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIAEGFDNPNMRKLIDEVKQEVAAGNSFASALRKKPLYFDDLYCNLVDSGEQSGALETLLDRIATYKEKT
ESLKAKIKKAMTYPIAVIVVAVIVTAILLIKVVPQFESVFQGFGAELPAFTQVVVDLSRGLQNWWFVVLGGIFAVAFIFS
NTYKRSEKFRDALDRALLKAPIIGDILYKAVVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVHKIKVDVSSGT
QLNFAMRSTGIFPTMAVQMTAIGEEAGSLDEMLDKTASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIVAMYLPIFQ
LGAVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=475380 H7683_RS14420 WP_181563849.1 3089108..3090328(-) (pilC) [Pseudomonas mendocina strain CPS5]
ATGGCGGAAAAAGCACTGAAAACCAGCGTGTTCGCCTGGGAAGGCACCGATAGAAAGGGTGGCAAGGTAAAGGGCGAGCT
CAGTGGGCAATCGCCGGCCCTGGTCAAGGCTCAACTGCGCAAGCAGGGTATCAACCCGATCAAAGTGCGCAAGAAAGCGG
TTTCATTGTTTGGCGCGGGCAAGAAAATCAAGCCGATGGACATTGCCCTGTTCACCCGGCAAATGGCAACTATGATGAAG
GCCGGCGTACCGTTGTTGCAGTCCTTCGACATCATCGCTGAGGGTTTCGACAACCCCAATATGCGTAAGCTGATCGATGA
GGTTAAGCAGGAAGTTGCGGCCGGTAACAGCTTCGCTTCCGCACTACGCAAAAAACCGCTGTATTTCGACGACCTGTATT
GCAACCTGGTCGACTCAGGCGAACAGTCAGGCGCGCTGGAGACCTTGCTGGATCGTATTGCCACCTACAAGGAAAAGACC
GAATCCCTGAAAGCAAAGATCAAGAAGGCAATGACCTACCCGATTGCTGTGATCGTGGTCGCGGTCATCGTGACAGCCAT
TCTACTGATCAAGGTAGTACCTCAGTTCGAATCGGTATTCCAGGGTTTTGGTGCGGAGTTACCAGCCTTCACCCAAGTGG
TCGTAGATCTATCACGCGGCCTGCAAAATTGGTGGTTCGTGGTGCTGGGCGGGATATTCGCCGTCGCATTCATTTTTTCC
AACACATACAAGCGTTCGGAAAAATTTCGCGACGCTCTGGATAGGGCACTGCTCAAGGCTCCAATCATTGGCGACATTCT
GTACAAGGCCGTGGTTGCACGCTTTGCCCGCACCCTCGCCACGACTTTTGCCGCTGGCGTGCCACTGGTCGACGCACTCG
ACTCGGTAGCCGGCGCCACCGGCAACGTGGTTTTCCGCAACGCCGTACACAAGATCAAAGTGGACGTGTCTTCGGGTACT
CAACTGAACTTCGCCATGCGCAGCACCGGCATCTTCCCCACTATGGCCGTGCAAATGACAGCTATCGGCGAAGAAGCCGG
CTCGCTGGACGAAATGCTTGATAAGACCGCCAGTTACTACGAAGAAGAAGTGGACAACGCCGTAGACAACCTCACTACCC
TGATGGAACCAATGATCATGGCTGTGCTTGGGGTACTGGTTGGTGGCCTTATCGTGGCGATGTATCTGCCTATCTTCCAG
CTGGGTGCGGTGGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.753

99.754

0.796
  pilC Acinetobacter baylyi ADP1

61.576

100

0.616
  pilC Acinetobacter baumannii D1279779

60.741

99.754

0.606
  pilC Legionella pneumophila strain ERS1305867

53.788

97.537

0.525
  pilG Neisseria gonorrhoeae MS11

45.658

99.261

0.453
  pilG Neisseria meningitidis 44/76-A

45.658

99.261

0.453
  pilC Vibrio cholerae strain A1552

42.857

100

0.429
  pilC Vibrio campbellii strain DS40M4

41.604

98.276

0.409
  pilC Thermus thermophilus HB27

36.725

99.261

0.365