Detailed information NTG0475379

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H7683_RS14415
• Genome accession: NZ_CP060288
• Coordinates: 3088238..3089104 (-)
• Length: 288 a.a.
• NCBI ID: WP_209449216.1
• Uniprot ID: -
• Organism: Pseudomonas mendocina strain CPS5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3083238..3094104

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7683_RS14380 (H7683_14375)	-	3084318..3084491 (-)	174	WP_013714021.1	DUF3094 family protein	-
H7683_RS14385 (H7683_14380)	-	3084698..3085252 (-)	555	WP_017361400.1	MOSC domain-containing protein	-
H7683_RS14390 (H7683_14385)	-	3085249..3085878 (-)	630	WP_179590646.1	DUF1780 domain-containing protein	-
H7683_RS14395 (H7683_14390)	-	3086087..3086776 (+)	690	WP_209449213.1	energy-coupling factor ABC transporter permease	-
H7683_RS14400 (H7683_14395)	-	3086883..3087098 (+)	216	WP_209449214.1	hypothetical protein	-
H7683_RS14405 (H7683_14400)	yacG	3087169..3087363 (-)	195	WP_013714026.1	DNA gyrase inhibitor YacG	-
H7683_RS14410 (H7683_14405)	coaE	3087360..3087968 (-)	609	WP_209449215.1	dephospho-CoA kinase	-
H7683_RS14415 (H7683_14410)	pilD	3088238..3089104 (-)	867	WP_209449216.1	A24 family peptidase	Machinery gene
H7683_RS14420 (H7683_14415)	pilC	3089108..3090328 (-)	1221	WP_181563849.1	type II secretion system F family protein	Machinery gene
H7683_RS14425 (H7683_14420)	pilB	3090332..3092032 (-)	1701	WP_209451037.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H7683_RS24590 (H7683_14425)	pilA	3092261..3092446 (+)	186	WP_143501533.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
H7683_RS14435 (H7683_14430)	-	3092464..3092892 (+)	429	WP_143501531.1	hypothetical protein	-
H7683_RS14440 (H7683_14435)	-	3093046..3093855 (+)	810	WP_244973822.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31846.77 Da
• Isoelectric Point: 5.6608

>NTDB_id=475379 H7683_RS14415 WP_209449216.1 3088238..3089104(-) (pilD) [Pseudomonas mendocina strain CPS5]
MALEIMADNLSAFVFICVVFGLLIGSFLNVVVYRLPLMLQRDWQSQAREVLELPAAPTTETFNLILPNSSCPNCGHEIRP
WENIPVISYLFLRGKCSNCKTPISKRYPIVELACGLLSGYVAWHFGFTWQAGAMLVLAWGLLAMSLIDADHQILPDVLVL
PLLWLGLIVNYYGLFTSLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVGA
VLGVIMLRMRGSDSSTPVPFGPYLAIAGWIALLWGDVITSNYLKFAGF

Nucleotide

• Length: 867 bp

>NTDB_id=475379 H7683_RS14415 WP_209449216.1 3088238..3089104(-) (pilD) [Pseudomonas mendocina strain CPS5]
ATGGCGCTCGAAATTATGGCCGACAATCTGTCGGCCTTTGTTTTTATCTGTGTAGTTTTTGGCCTGCTAATCGGCAGCTT
CCTCAACGTCGTGGTCTACCGCCTACCGCTGATGCTGCAACGCGACTGGCAAAGCCAGGCACGTGAAGTATTGGAACTAC
CAGCGGCGCCGACAACAGAAACTTTCAACCTGATACTCCCCAATTCCTCATGCCCCAACTGCGGCCATGAGATCCGCCCT
TGGGAAAACATTCCGGTGATCAGCTACCTGTTCCTGCGCGGCAAGTGCTCGAACTGCAAGACGCCGATCAGCAAGCGCTA
CCCCATCGTAGAACTGGCCTGCGGCCTGCTTTCAGGCTATGTCGCCTGGCACTTCGGCTTTACCTGGCAAGCCGGAGCGA
TGCTGGTGCTGGCCTGGGGGTTGCTGGCGATGAGTCTGATCGATGCCGATCACCAGATACTGCCGGACGTGCTGGTGCTG
CCGCTGCTTTGGCTGGGCTTGATCGTCAATTACTACGGGTTGTTCACCAGCCTGGAAGATGCCTTGTGGGGGGCGATCGC
CGGTTATCTGAGCCTATGGTCGGTGTACTGGCTATTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGCTGGCCATGCTCGGCGCCTGGGGGGGCTGGCAGATTCTGCCACTGACCATTCTGCTGTCGTCGCTGGTCGGGGCG
GTGCTCGGGGTAATCATGCTACGCATGCGTGGCAGCGACTCCAGCACGCCGGTTCCCTTCGGGCCCTATCTGGCGATAGC
AGGGTGGATCGCCTTGCTTTGGGGTGATGTGATTACTAGTAACTATCTGAAGTTCGCTGGGTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.878	96.528	0.51
pilD	Vibrio cholerae strain A1552	53.285	95.139	0.507
pilD	Acinetobacter nosocomialis M2	52.518	96.528	0.507
pilD	Vibrio campbellii strain DS40M4	53.114	94.792	0.503
pilD	Neisseria gonorrhoeae MS11	49.815	94.097	0.469