Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   H7F27_RS02745 Genome accession   NZ_CP060193
Coordinates   549991..550332 (+) Length   113 a.a.
NCBI ID   WP_024123111.1    Uniprot ID   A0A9Q4HR41
Organism   Bacillus sp. PAMC26543     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 544991..555332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS02725 (H7F27_02725) - 547329..547988 (+) 660 WP_185848524.1 class A sortase -
  H7F27_RS02730 (H7F27_02730) blaOXA 548089..548892 (-) 804 WP_185848525.1 class D beta-lactamase -
  H7F27_RS02735 (H7F27_02735) - 548944..549354 (-) 411 WP_024123113.1 YwpF-like family protein -
  H7F27_RS02740 (H7F27_02740) - 549530..549913 (+) 384 WP_024123112.1 hypothetical protein -
  H7F27_RS02745 (H7F27_02745) ssbB 549991..550332 (+) 342 WP_024123111.1 single-stranded DNA-binding protein SsbB Machinery gene
  H7F27_RS02750 (H7F27_02750) - 550559..551335 (+) 777 WP_103671910.1 DeoR/GlpR family DNA-binding transcription regulator -
  H7F27_RS02755 (H7F27_02755) - 551341..552198 (+) 858 WP_185848526.1 Cof-type HAD-IIB family hydrolase -
  H7F27_RS02760 (H7F27_02760) - 552321..555095 (-) 2775 WP_185848527.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12566.32 Da        Isoelectric Point: 8.4667

>NTDB_id=474477 H7F27_RS02745 WP_024123111.1 549991..550332(+) (ssbB) [Bacillus sp. PAMC26543]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGLSGRIQTR
SYENAEGVKVYVTEVMADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=474477 H7F27_RS02745 WP_024123111.1 549991..550332(+) (ssbB) [Bacillus sp. PAMC26543]
ATGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGGTACACTTCTGCAGGCGCGGCAGTCAC
ACACATTACGATTGCAGTTAACCGCAGCTTCAAAAATGCTTCAGGAGAAATTGAAGCGGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCCTAAGCGGACGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTACGTAACTGAAGTGATGGCTGATACTGTTCGTTTTATGGACCCTAAACC
TCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

92.92

100

0.929
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.264

93.805

0.584
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

93.805

0.54
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.222

95.575

0.451
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae D39

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae R6

42.593

95.575

0.407
  ssbB/cilA Streptococcus mitis SK321

42.593

95.575

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

40

92.92

0.372