Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   H5715_RS01810 Genome accession   NZ_CP060084
Coordinates   433390..433827 (+) Length   145 a.a.
NCBI ID   WP_075185849.1    Uniprot ID   -
Organism   Teredinibacter haidensis strain Bs08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428390..438827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5715_RS01790 coaE 428533..429123 (-) 591 WP_075185853.1 dephospho-CoA kinase -
  H5715_RS01795 pilD 429130..430017 (-) 888 WP_075185852.1 A24 family peptidase Machinery gene
  H5715_RS01800 pilC 430017..431243 (-) 1227 WP_075185851.1 type II secretion system F family protein Machinery gene
  H5715_RS01805 pilB 431249..432976 (-) 1728 WP_075185850.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H5715_RS01810 pilE 433390..433827 (+) 438 WP_075185849.1 pilin Machinery gene
  H5715_RS01815 - 434063..435952 (+) 1890 WP_185906581.1 hypothetical protein -
  H5715_RS01820 - 436041..436898 (+) 858 WP_075185847.1 glycosyltransferase family 2 protein -
  H5715_RS01825 - 436976..438241 (+) 1266 WP_075185846.1 oligosaccharide flippase family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15125.24 Da        Isoelectric Point: 9.0423

>NTDB_id=473745 H5715_RS01810 WP_075185849.1 433390..433827(+) (pilE) [Teredinibacter haidensis strain Bs08]
MKKVQQGFTLIELMIVVAIIGILAAVALPAYQDYTIRSQVSEGLNLAQGAKVGVQDFWSDRGRFPASNVSAGIALPASIV
GTYVSTVSVGASGVVTITYGRNANTAITTAGTNTCTITPRSAGGSVVFAGDCTFDNKYRPQAFRD

Nucleotide


Download         Length: 438 bp        

>NTDB_id=473745 H5715_RS01810 WP_075185849.1 433390..433827(+) (pilE) [Teredinibacter haidensis strain Bs08]
ATGAAAAAAGTACAACAAGGTTTTACTCTTATCGAATTGATGATAGTTGTTGCGATTATCGGTATTCTGGCAGCGGTTGC
GCTTCCGGCGTATCAAGACTACACCATTCGTAGCCAGGTTTCTGAAGGTTTGAACTTGGCGCAGGGCGCTAAAGTAGGTG
TTCAGGATTTCTGGTCTGATCGTGGCCGTTTCCCCGCTAGCAACGTTTCGGCTGGTATTGCGTTGCCAGCTTCAATTGTT
GGCACCTATGTTTCTACCGTTTCAGTTGGGGCTAGCGGTGTGGTCACGATTACTTATGGTCGTAATGCGAACACGGCTAT
AACCACTGCTGGTACAAACACTTGCACTATTACCCCAAGAAGTGCAGGTGGTAGTGTTGTTTTTGCGGGCGACTGCACTT
TTGACAATAAATATCGTCCACAAGCGTTCCGTGACTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)

Pilin (bacterial filament) (Pilin)

(37-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

43.293

100

0.49
  pilA2 Legionella pneumophila strain ERS1305867

47.222

99.31

0.469
  pilA2 Legionella pneumophila str. Paris

47.222

99.31

0.469
  comP Acinetobacter baylyi ADP1

41.176

100

0.434
  pilA/pilA1 Eikenella corrodens VA1

48.413

86.897

0.421
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.5

100

0.393
  pilE Neisseria gonorrhoeae strain FA1090

59.375

66.207

0.393
  pilA Ralstonia pseudosolanacearum GMI1000

45.161

85.517

0.386