Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H5715_RS01800 Genome accession   NZ_CP060084
Coordinates   430017..431243 (-) Length   408 a.a.
NCBI ID   WP_075185851.1    Uniprot ID   -
Organism   Teredinibacter haidensis strain Bs08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 425017..436243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5715_RS01775 argJ 426715..427935 (+) 1221 WP_075185856.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  H5715_RS01780 mutT 427935..428339 (+) 405 WP_075185855.1 8-oxo-dGTP diphosphatase MutT -
  H5715_RS01785 yacG 428336..428536 (-) 201 WP_075185854.1 DNA gyrase inhibitor YacG -
  H5715_RS01790 coaE 428533..429123 (-) 591 WP_075185853.1 dephospho-CoA kinase -
  H5715_RS01795 pilD 429130..430017 (-) 888 WP_075185852.1 A24 family peptidase Machinery gene
  H5715_RS01800 pilC 430017..431243 (-) 1227 WP_075185851.1 type II secretion system F family protein Machinery gene
  H5715_RS01805 pilB 431249..432976 (-) 1728 WP_075185850.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H5715_RS01810 pilE 433390..433827 (+) 438 WP_075185849.1 pilin Machinery gene
  H5715_RS01815 - 434063..435952 (+) 1890 WP_185906581.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 43963.62 Da        Isoelectric Point: 9.5708

>NTDB_id=473743 H5715_RS01800 WP_075185851.1 430017..431243(-) (pilC) [Teredinibacter haidensis strain Bs08]
MATAKASATTEVFVYKGVDKKGHKVTGEVFSPSPALAKAQLLKQGVRANSVRRKPKPLFGGGGKKINPLDIAIFTRQMAT
MMKAGVPLVQSFEIVAGGSENQRMADLIRGIKDDVAAGGGFAASLRKRPKYFDDLFCNLVESGEQSGALETMLERIATYK
EKTEQLKAKIKKAMTYPIAVVAVAIVVTGILLVKVVPQFADTFSSFGADLPAFTLFVLHLSELAQEYWLVILVGIILTVV
FYGKAKEKSKGFRNFMDRLILKVPIVGGIVYQSIIARFARTLSTTFAAGVPLIDALQSVAGATGNSLYETAVLRIRDDVS
TGTQLNASISNTNIFPAMLIQMVAIGEESGALDDMLDKVANYYEEGVDNMVDSLTSLLEPMIMSILGVLVGGLMIAMYLP
IFQIGQAI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=473743 H5715_RS01800 WP_075185851.1 430017..431243(-) (pilC) [Teredinibacter haidensis strain Bs08]
ATGGCAACCGCAAAAGCATCCGCAACAACCGAAGTCTTTGTCTACAAAGGCGTAGATAAAAAGGGCCACAAAGTTACGGG
GGAGGTTTTCAGCCCAAGCCCTGCTCTGGCCAAGGCTCAGCTTTTAAAACAAGGGGTACGGGCAAACTCTGTACGACGAA
AACCAAAACCTCTGTTCGGTGGTGGCGGAAAAAAAATCAACCCCTTGGATATTGCCATTTTCACACGACAAATGGCAACA
ATGATGAAAGCGGGTGTGCCTCTCGTGCAAAGTTTTGAAATTGTTGCTGGCGGCAGTGAAAACCAAAGAATGGCGGATTT
AATTCGAGGCATCAAAGACGACGTCGCTGCTGGCGGTGGATTTGCGGCCTCGTTGCGCAAACGTCCCAAATACTTCGATG
ACCTATTTTGCAACCTAGTAGAATCCGGTGAGCAATCGGGCGCTCTTGAAACGATGCTAGAGCGAATTGCCACCTACAAA
GAAAAAACGGAACAGCTAAAAGCTAAAATTAAAAAGGCAATGACATACCCCATTGCCGTCGTTGCTGTAGCCATTGTTGT
AACAGGTATATTGCTGGTAAAAGTTGTTCCTCAATTTGCAGACACTTTTAGCAGCTTTGGTGCCGATTTGCCTGCGTTCA
CACTTTTTGTCTTACATCTTTCAGAATTAGCGCAAGAATACTGGCTTGTAATTCTAGTGGGTATTATTTTGACGGTTGTC
TTTTATGGAAAAGCAAAGGAAAAAAGTAAGGGTTTTAGAAATTTCATGGATAGACTAATCCTCAAAGTTCCTATTGTCGG
CGGTATTGTTTATCAGTCGATTATCGCGCGCTTCGCGCGCACCCTGTCTACAACGTTCGCAGCGGGAGTCCCCTTAATCG
ACGCACTTCAGTCCGTAGCCGGAGCCACTGGCAACTCGCTCTACGAAACAGCAGTATTACGCATACGCGATGACGTTTCT
ACTGGTACCCAACTGAACGCTTCAATATCTAACACCAATATTTTTCCGGCTATGCTTATTCAAATGGTAGCCATCGGCGA
AGAGTCTGGCGCGCTCGATGATATGCTAGATAAGGTCGCCAATTACTATGAAGAAGGCGTAGATAATATGGTAGACAGCC
TGACTTCGCTACTCGAACCGATGATTATGTCAATACTCGGTGTCCTTGTGGGCGGCCTTATGATTGCTATGTACCTGCCC
ATATTCCAGATTGGTCAGGCTATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.716

99.265

0.623
  pilC Acinetobacter baylyi ADP1

61.823

99.51

0.615
  pilC Acinetobacter baumannii D1279779

61.369

100

0.615
  pilC Legionella pneumophila strain ERS1305867

55.419

99.51

0.551
  pilG Neisseria meningitidis 44/76-A

41.31

97.304

0.402
  pilG Neisseria gonorrhoeae MS11

41.31

97.304

0.402
  pilC Vibrio cholerae strain A1552

40.816

96.078

0.392
  pilC Vibrio campbellii strain DS40M4

39.186

96.324

0.377