Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H5715_RS01795 Genome accession   NZ_CP060084
Coordinates   429130..430017 (-) Length   295 a.a.
NCBI ID   WP_075185852.1    Uniprot ID   -
Organism   Teredinibacter haidensis strain Bs08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 424130..435017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5715_RS01775 argJ 426715..427935 (+) 1221 WP_075185856.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  H5715_RS01780 mutT 427935..428339 (+) 405 WP_075185855.1 8-oxo-dGTP diphosphatase MutT -
  H5715_RS01785 yacG 428336..428536 (-) 201 WP_075185854.1 DNA gyrase inhibitor YacG -
  H5715_RS01790 coaE 428533..429123 (-) 591 WP_075185853.1 dephospho-CoA kinase -
  H5715_RS01795 pilD 429130..430017 (-) 888 WP_075185852.1 A24 family peptidase Machinery gene
  H5715_RS01800 pilC 430017..431243 (-) 1227 WP_075185851.1 type II secretion system F family protein Machinery gene
  H5715_RS01805 pilB 431249..432976 (-) 1728 WP_075185850.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H5715_RS01810 pilE 433390..433827 (+) 438 WP_075185849.1 pilin Machinery gene

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32439.70 Da        Isoelectric Point: 7.2159

>NTDB_id=473742 H5715_RS01795 WP_075185852.1 429130..430017(-) (pilD) [Teredinibacter haidensis strain Bs08]
MTTYSFGYDPVVLAGLLITTLVLGLMIGSFLNVVIYRLPLSMLAKWKVECKEFLSDNPNTEDEVAPNFNIAFPASHCPKC
KAPIKPWQNIPVLSYLILKGRCHSCKASISIRYPIIEVITGLLSVFCLLILGFSYEAGLALVFTWSLIALTMIDIDHRLL
PDGITLPLMWLGILLNSFHLFTDLQSAVYGAILGYGVLWSVFWLFKFATGKEGMGFGDFKLLAALGAWMGWEMLPLIIIL
SSFVGAAIGIAGILIAGRDKNIPIPFGPYLAIAGWIAFFWGDQITAAYLNYAKVG

Nucleotide


Download         Length: 888 bp        

>NTDB_id=473742 H5715_RS01795 WP_075185852.1 429130..430017(-) (pilD) [Teredinibacter haidensis strain Bs08]
ATGACAACCTACAGTTTCGGTTACGATCCAGTGGTACTCGCAGGTCTACTTATCACTACACTGGTTCTGGGCTTGATGAT
TGGCAGCTTCCTAAACGTCGTTATCTATCGTTTGCCCCTTTCCATGCTGGCCAAATGGAAAGTTGAGTGTAAAGAATTTT
TATCCGACAACCCCAACACTGAAGATGAGGTAGCCCCCAACTTCAATATCGCCTTCCCCGCTTCGCATTGCCCAAAGTGT
AAAGCGCCCATCAAGCCCTGGCAGAACATTCCAGTACTTAGCTACCTTATCCTCAAAGGGCGCTGCCACAGCTGTAAGGC
CAGCATTTCTATCCGCTATCCGATAATAGAGGTAATAACCGGCCTGCTTTCCGTTTTTTGCCTTCTCATTCTCGGCTTTA
GCTATGAAGCCGGGCTTGCATTGGTATTTACCTGGAGCCTCATTGCCTTAACCATGATCGATATCGATCATAGGTTACTC
CCCGATGGCATTACCCTGCCCTTAATGTGGCTGGGTATACTGCTTAATTCTTTTCACCTCTTTACCGATTTACAAAGCGC
TGTTTACGGAGCCATTTTGGGTTACGGTGTGCTCTGGAGTGTCTTCTGGCTGTTCAAATTTGCCACTGGCAAGGAAGGGA
TGGGCTTTGGCGACTTTAAGCTACTGGCGGCTCTAGGCGCCTGGATGGGATGGGAAATGCTGCCACTGATTATTATCCTG
TCATCTTTCGTGGGTGCCGCAATCGGTATAGCCGGTATTCTTATCGCCGGTCGAGACAAAAACATCCCCATACCTTTTGG
CCCCTATCTCGCCATCGCAGGCTGGATCGCATTTTTTTGGGGAGATCAAATTACCGCTGCCTACCTGAACTACGCCAAAG
TCGGCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-129)

Type IV leader peptidase family (Peptidase_A24)

(141-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

52.518

94.237

0.495
  pilD Acinetobacter nosocomialis M2

52.158

94.237

0.492
  pilD Vibrio campbellii strain DS40M4

49.084

92.542

0.454
  pilD Vibrio cholerae strain A1552

48.889

91.525

0.447
  pilD Neisseria gonorrhoeae MS11

49.248

90.169

0.444