Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   H2R00_RS17495 Genome accession   NZ_CP059494
Coordinates   3541581..3541928 (+) Length   115 a.a.
NCBI ID   WP_154994709.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3536581..3546928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS17465 - 3537681..3538520 (+) 840 WP_182071106.1 flagellar hook-basal body protein -
  H2R00_RS17470 - 3538564..3539391 (+) 828 WP_154994717.1 flagellar hook-basal body protein -
  H2R00_RS17475 fabZ 3539586..3540020 (+) 435 WP_003185902.1 3-hydroxyacyl-ACP dehydratase FabZ -
  H2R00_RS17480 mscL 3540090..3540470 (+) 381 WP_154994715.1 large conductance mechanosensitive channel protein MscL -
  H2R00_RS17485 - 3540511..3540924 (-) 414 WP_154994713.1 YwpF-like family protein -
  H2R00_RS17490 - 3541105..3541476 (+) 372 WP_154994711.1 hypothetical protein -
  H2R00_RS17495 ssbB 3541581..3541928 (+) 348 WP_154994709.1 single-stranded DNA-binding protein Machinery gene
  H2R00_RS17500 - 3542149..3543111 (+) 963 WP_154994707.1 sugar-binding transcriptional regulator -
  H2R00_RS17505 - 3543108..3543551 (+) 444 WP_154994705.1 transcriptional regulator GutM -
  H2R00_RS17510 - 3543548..3544096 (+) 549 WP_043925087.1 PTS glucitol/sorbitol transporter subunit IIC -
  H2R00_RS17515 - 3544114..3545121 (+) 1008 WP_176276682.1 PTS glucitol/sorbitol transporter subunit IIB -
  H2R00_RS17520 - 3545145..3545516 (+) 372 WP_154994702.1 PTS glucitol/sorbitol transporter subunit IIA -
  H2R00_RS17525 srlD 3545531..3546316 (+) 786 WP_154994700.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12666.36 Da        Isoelectric Point: 5.8845

>NTDB_id=470085 H2R00_RS17495 WP_154994709.1 3541581..3541928(+) (ssbB) [Bacillus haynesii strain P19]
MFNEIMLVGRLTKDPELRYTSDGVPVANVTLAVSRPFKNAAGEIEADFVNCTLWRKTAVNTAEYCEKGSIIGLSGRIQTR
QYVNSEGEGVFITEVVARSVRFLGESRKAHEPADA

Nucleotide


Download         Length: 348 bp        

>NTDB_id=470085 H2R00_RS17495 WP_154994709.1 3541581..3541928(+) (ssbB) [Bacillus haynesii strain P19]
ATGTTTAATGAGATCATGCTGGTCGGGCGTTTGACAAAAGACCCCGAACTTCGGTATACATCTGACGGTGTCCCTGTTGC
AAATGTGACGCTGGCTGTCAGCAGGCCTTTCAAAAATGCAGCAGGCGAAATTGAAGCGGATTTTGTCAATTGCACGCTGT
GGCGCAAAACTGCCGTGAACACAGCCGAATATTGCGAAAAAGGCTCCATCATCGGGCTGAGCGGAAGAATCCAAACCCGC
CAATACGTCAATTCAGAAGGCGAAGGCGTCTTTATTACAGAAGTTGTCGCCCGGTCAGTCAGATTTTTGGGAGAAAGCCG
AAAAGCGCATGAGCCGGCGGATGCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

72.816

89.565

0.652
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.223

89.565

0.53
  ssb Latilactobacillus sakei subsp. sakei 23K

51.351

96.522

0.496
  ssbA Streptococcus mutans UA159

46.789

94.783

0.443
  ssbB Lactococcus lactis subsp. cremoris KW2

44.34

92.174

0.409
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.925

93.043

0.409
  ssbB/cilA Streptococcus mitis NCTC 12261

42.991

93.043

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.991

93.043

0.4
  ssbB/cilA Streptococcus pneumoniae Rx1

42.056

93.043

0.391
  ssbB/cilA Streptococcus pneumoniae D39

42.056

93.043

0.391
  ssbB/cilA Streptococcus pneumoniae R6

42.056

93.043

0.391
  ssbB/cilA Streptococcus mitis SK321

42.056

93.043

0.391