Detailed information NTG0470085

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JSQ77_RS05060
• Genome accession: NZ_CP069712
• Coordinates: 1059224..1060216 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EA13
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1054224..1065216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JSQ77_RS05030 (JSQ77_05035)	ispD	1054285..1054995 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JSQ77_RS05035 (JSQ77_05040)	ispF	1054995..1055474 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JSQ77_RS05040 (JSQ77_05045)	truD	1055471..1056520 (+)	1050	WP_024238652.1	tRNA pseudouridine(13) synthase TruD	-
JSQ77_RS05045 (JSQ77_05050)	surE	1056501..1057262 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JSQ77_RS05050 (JSQ77_05055)	pcm	1057256..1057882 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JSQ77_RS05055 (JSQ77_05060)	nlpD	1058067..1059161 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
JSQ77_RS05060 (JSQ77_05065)	rpoS	1059224..1060216 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JSQ77_RS05065 (JSQ77_05070)	ygbN	1060310..1061674 (-)	1365	WP_000104429.1	GntP family transporter	-
JSQ77_RS05070 (JSQ77_05075)	ygbM	1061763..1062539 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
JSQ77_RS05075 (JSQ77_05080)	ygbL	1062544..1063182 (-)	639	WP_001278994.1	aldolase	-
JSQ77_RS05080 (JSQ77_05085)	otnK	1063179..1064441 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=470085 JSQ77_RS05060 WP_000081550.1 1059224..1060216(+) (rpoS) [Escherichia coli strain EA13]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=470085 JSQ77_RS05060 WP_000081550.1 1059224..1060216(+) (rpoS) [Escherichia coli strain EA13]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715