Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HW090_RS06940 Genome accession   NZ_CP058349
Coordinates   1579442..1580647 (-) Length   401 a.a.
NCBI ID   WP_256930759.1    Uniprot ID   -
Organism   Pseudomonas sp. ABC1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1574442..1585647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW090_RS06905 (HW090_06905) petA 1574894..1575487 (-) 594 WP_179112821.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  HW090_RS06910 (HW090_06910) rpsI 1575793..1576185 (-) 393 WP_179112822.1 30S ribosomal protein S9 -
  HW090_RS06915 (HW090_06915) rplM 1576200..1576628 (-) 429 WP_179112823.1 50S ribosomal protein L13 -
  HW090_RS06920 (HW090_06920) - 1576975..1577664 (+) 690 WP_179112824.1 energy-coupling factor ABC transporter permease -
  HW090_RS06925 (HW090_06925) yacG 1577697..1577888 (-) 192 WP_179112825.1 DNA gyrase inhibitor YacG -
  HW090_RS06930 (HW090_06930) coaE 1577885..1578493 (-) 609 WP_373416369.1 dephospho-CoA kinase -
  HW090_RS06935 (HW090_06935) pilD 1578569..1579438 (-) 870 WP_179112827.1 A24 family peptidase Machinery gene
  HW090_RS06940 (HW090_06940) pilC 1579442..1580647 (-) 1206 WP_256930759.1 type II secretion system F family protein Machinery gene
  HW090_RS06945 (HW090_06945) pilB 1580660..1582363 (-) 1704 WP_256930760.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HW090_RS06950 (HW090_06950) pilA 1582664..1582834 (+) 171 WP_179112828.1 type IV pilin protein Machinery gene
  HW090_RS06955 (HW090_06955) - 1582847..1583317 (+) 471 WP_179112829.1 hypothetical protein -
  HW090_RS06960 (HW090_06960) - 1583671..1584240 (-) 570 WP_179112830.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  HW090_RS06965 (HW090_06965) - 1584240..1584644 (-) 405 WP_179112831.1 DUF4878 domain-containing protein -
  HW090_RS06970 (HW090_06970) - 1584731..1585072 (+) 342 WP_179112832.1 FKBP-type peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 43578.13 Da        Isoelectric Point: 9.8463

>NTDB_id=463992 HW090_RS06940 WP_256930759.1 1579442..1580647(-) (pilC) [Pseudomonas sp. ABC1]
MKNRIFHWEGTDSQGTRLSGEVSEASAMLARVRLRSQGVRSLRVRRKPRPLFNTRRRVSPRDIALFTRQMAIMVKAGVPL
LQALGSVGECFGRSAMSGLVQEIRQEIAGGNSFSGALQKWPEHFDGVYCNLVVAGEQSGTLDVLMDTLAVYKERGELLKG
RVRRAMVYPLAVIVMALLVSLLLLIEVVPQFEAVFADFGAQLPAFTLFIVGLSDGLRQSGYLVLAIFILSGFIYGYLHGH
VTSVRHMQERFSLKVPVLGAILRKVAVARYARTLATTFAAGVPLVEALVSVAGATGNVVFRNAVDGVRADVTSGQQLHWA
MRRVGVFPGMMVQMVAIGEEAGALDEMLDRAAGIYESEVDNTVDNLTTLMEPAIMAVLGILVGGLIIAMYLPIFQLGNVI
G

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=463992 HW090_RS06940 WP_256930759.1 1579442..1580647(-) (pilC) [Pseudomonas sp. ABC1]
TTGAAAAATCGGATTTTTCACTGGGAAGGCACGGACAGCCAGGGCACGCGACTCAGTGGGGAAGTGTCCGAGGCGAGCGC
GATGCTGGCGAGAGTGCGATTGCGCAGCCAGGGGGTTCGCTCATTGCGCGTGAGGAGAAAGCCTCGGCCTCTTTTCAATA
CGAGGCGGCGGGTCTCACCACGGGACATTGCATTGTTCACTCGTCAGATGGCGATCATGGTGAAAGCCGGGGTGCCGCTT
CTGCAGGCACTTGGGAGCGTAGGCGAATGTTTCGGCCGGTCTGCAATGAGTGGGCTGGTGCAGGAAATTCGGCAGGAAAT
TGCTGGCGGGAACAGTTTCTCTGGTGCCTTGCAAAAGTGGCCCGAGCACTTCGATGGCGTGTACTGCAACCTGGTCGTGG
CGGGGGAGCAGTCAGGGACGCTGGATGTGCTGATGGACACCCTCGCGGTCTACAAGGAGCGCGGTGAACTGCTGAAGGGG
CGGGTTCGTCGTGCCATGGTCTACCCGCTAGCCGTGATCGTGATGGCCTTGCTCGTTTCATTGCTCTTGCTGATCGAAGT
GGTGCCTCAGTTCGAGGCGGTGTTTGCCGATTTCGGCGCGCAATTACCGGCATTCACGCTATTCATCGTGGGGCTTTCCG
ATGGGCTACGACAAAGCGGGTATCTGGTACTGGCCATCTTCATCCTGAGTGGCTTCATCTATGGCTACCTTCATGGGCAT
GTCACTTCCGTCAGGCACATGCAAGAACGTTTCTCGCTGAAGGTTCCGGTCCTGGGGGCGATTCTTCGCAAGGTTGCCGT
GGCTCGCTATGCCAGAACCCTGGCAACCACTTTTGCTGCTGGTGTGCCGCTGGTGGAGGCCCTGGTTTCAGTGGCGGGGG
CTACTGGCAATGTGGTATTTCGCAACGCGGTCGATGGCGTACGTGCGGATGTCACCTCAGGGCAGCAACTGCATTGGGCC
ATGCGCCGTGTCGGCGTGTTTCCAGGCATGATGGTGCAGATGGTCGCCATCGGCGAGGAGGCGGGGGCACTGGATGAGAT
GCTCGACCGAGCTGCCGGCATCTATGAGTCGGAAGTCGACAATACGGTGGATAATCTCACGACCCTGATGGAGCCCGCGA
TAATGGCTGTCCTGGGGATTCTGGTTGGCGGTTTGATCATTGCCATGTATCTGCCGATCTTCCAGTTGGGCAATGTAATT
GGGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(66-189)

Type II secretion system (T2SS), protein F (T2SSF)

(271-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.75

99.751

0.566
  pilC Acinetobacter baylyi ADP1

50

99.751

0.499
  pilC Acinetobacter baumannii D1279779

48.622

99.501

0.484
  pilC Legionella pneumophila strain ERS1305867

45.226

99.252

0.449
  pilG Neisseria gonorrhoeae MS11

42.222

100

0.426
  pilG Neisseria meningitidis 44/76-A

41.975

100

0.424
  pilC Vibrio campbellii strain DS40M4

41.089

100

0.414
  pilC Vibrio cholerae strain A1552

39.303

100

0.394
  pilC Thermus thermophilus HB27

36.658

100

0.367