Detailed information NTG0463991

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HW090_RS06935
• Genome accession: NZ_CP058349
• Coordinates: 1578569..1579438 (-)
• Length: 289 a.a.
• NCBI ID: WP_179112827.1
• Uniprot ID: A0A7L5RSC8
• Organism: Pseudomonas sp. ABC1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1573569..1584438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HW090_RS06900 (HW090_06900)	-	1573683..1574894 (-)	1212	WP_179112820.1	cytochrome bc complex cytochrome b subunit	-
HW090_RS06905 (HW090_06905)	petA	1574894..1575487 (-)	594	WP_179112821.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
HW090_RS06910 (HW090_06910)	rpsI	1575793..1576185 (-)	393	WP_179112822.1	30S ribosomal protein S9	-
HW090_RS06915 (HW090_06915)	rplM	1576200..1576628 (-)	429	WP_179112823.1	50S ribosomal protein L13	-
HW090_RS06920 (HW090_06920)	-	1576975..1577664 (+)	690	WP_179112824.1	energy-coupling factor ABC transporter permease	-
HW090_RS06925 (HW090_06925)	yacG	1577697..1577888 (-)	192	WP_179112825.1	DNA gyrase inhibitor YacG	-
HW090_RS06930 (HW090_06930)	coaE	1577885..1578493 (-)	609	WP_373416369.1	dephospho-CoA kinase	-
HW090_RS06935 (HW090_06935)	pilD	1578569..1579438 (-)	870	WP_179112827.1	A24 family peptidase	Machinery gene
HW090_RS06940 (HW090_06940)	pilC	1579442..1580647 (-)	1206	WP_256930759.1	type II secretion system F family protein	Machinery gene
HW090_RS06945 (HW090_06945)	pilB	1580660..1582363 (-)	1704	WP_256930760.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HW090_RS06950 (HW090_06950)	pilA	1582664..1582834 (+)	171	WP_179112828.1	type IV pilin protein	Machinery gene
HW090_RS06955 (HW090_06955)	-	1582847..1583317 (+)	471	WP_179112829.1	hypothetical protein	-
HW090_RS06960 (HW090_06960)	-	1583671..1584240 (-)	570	WP_179112830.1	YiiX/YebB-like N1pC/P60 family cysteine hydrolase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31952.92 Da
• Isoelectric Point: 6.9139

>NTDB_id=463991 HW090_RS06935 WP_179112827.1 1578569..1579438(-) (pilD) [Pseudomonas sp. ABC1]
MILDLLASDSLAFVSCAVVLGLLVGSFLNVVVHRLPIMMQREWQSQAREFLGLPDDEDRVAPFNLMQPRSCCPQCSHAIR
PWENIPLISWLVLRGRCSACKSPISCRYPLLELFCAFLSGIIAWHFGFSWQAGAMLLLTWGLLSMSLIDAEHQLLPDALV
LPLLWLGLIVNGFGLFATLHEALWGAVIGYMSLWSVYWLFKLTTGKEGMGYGDFKLLAMLGAWGGWQVLPATILLSALSG
AVIGSIMLRLRNANTSTPIPFGPYLALAGWVTLLWGDWISAQYLRLAGL

Nucleotide

• Length: 870 bp

>NTDB_id=463991 HW090_RS06935 WP_179112827.1 1578569..1579438(-) (pilD) [Pseudomonas sp. ABC1]
ATGATTCTTGATCTACTGGCCAGCGATTCGCTGGCGTTCGTTTCCTGTGCTGTCGTGCTCGGCTTGCTGGTGGGCAGCTT
CCTCAATGTGGTTGTCCATCGCCTGCCGATCATGATGCAGCGGGAGTGGCAGTCCCAGGCCAGGGAGTTCCTTGGTCTGC
CAGATGATGAGGACAGGGTTGCGCCCTTTAACTTGATGCAGCCTCGTTCATGCTGTCCGCAGTGTTCGCATGCCATTCGT
CCGTGGGAGAACATACCGCTGATCAGTTGGCTGGTACTGCGGGGGCGCTGTTCGGCATGCAAGTCGCCAATCAGCTGCCG
CTATCCTCTGTTGGAACTGTTCTGTGCGTTTTTGTCGGGCATCATCGCCTGGCACTTCGGCTTCTCCTGGCAGGCAGGTG
CCATGCTGCTGCTGACCTGGGGGTTGCTGAGCATGAGCCTGATCGATGCGGAGCATCAGCTACTGCCCGATGCGTTGGTA
CTCCCGCTGTTGTGGCTGGGCCTTATCGTCAACGGTTTTGGCCTGTTCGCCACCTTGCATGAAGCCTTGTGGGGGGCTGT
GATCGGTTATATGAGCCTGTGGTCAGTCTATTGGCTGTTCAAGCTGACGACGGGCAAAGAAGGCATGGGGTATGGTGACT
TCAAGCTCCTGGCGATGCTGGGGGCGTGGGGAGGCTGGCAGGTGCTGCCGGCCACGATTCTCTTGTCCGCACTCTCTGGC
GCCGTGATCGGCTCCATCATGCTGCGGCTGCGCAATGCCAATACGTCCACGCCGATCCCTTTCGGTCCCTACCTGGCGCT
TGCAGGCTGGGTGACCCTGCTATGGGGCGACTGGATCAGTGCGCAGTACCTGCGCCTGGCCGGTCTGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

3D structure

• AlphaFold DB: A0A7L5RSC8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.16	93.08	0.495
pilD	Vibrio campbellii strain DS40M4	52.612	92.734	0.488
pilD	Acinetobacter baumannii D1279779	50	95.502	0.478
pilD	Acinetobacter nosocomialis M2	50	94.118	0.471
pilD	Neisseria gonorrhoeae MS11	50	91.349	0.457