Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   HT135_RS19230 Genome accession   NZ_CP054584
Coordinates   3751856..3752197 (-) Length   113 a.a.
NCBI ID   WP_106019692.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KKD1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3746856..3757197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS19215 (HT135_19210) - 3747093..3749867 (+) 2775 WP_101864858.1 DEAD/DEAH box helicase -
  HT135_RS19220 (HT135_19215) - 3749990..3750847 (-) 858 WP_106019691.1 Cof-type HAD-IIB family hydrolase -
  HT135_RS19225 (HT135_19220) - 3750853..3751629 (-) 777 WP_106019942.1 DeoR/GlpR family DNA-binding transcription regulator -
  HT135_RS19230 (HT135_19225) ssbB 3751856..3752197 (-) 342 WP_106019692.1 single-stranded DNA-binding protein SsbB Machinery gene
  HT135_RS19235 (HT135_19230) - 3752275..3752658 (-) 384 WP_024123112.1 hypothetical protein -
  HT135_RS19240 (HT135_19235) - 3752834..3753244 (+) 411 WP_059292379.1 YwpF-like family protein -
  HT135_RS19245 (HT135_19240) blaOXA 3753296..3754099 (+) 804 WP_106019693.1 class D beta-lactamase -
  HT135_RS19250 (HT135_19245) mscL 3754132..3754524 (-) 393 WP_024123115.1 large conductance mechanosensitive channel protein MscL -
  HT135_RS19255 (HT135_19250) fabZ 3754596..3755021 (-) 426 WP_106019694.1 3-hydroxyacyl-ACP dehydratase FabZ -
  HT135_RS19260 (HT135_19255) - 3755215..3756279 (+) 1065 WP_024123117.1 tetratricopeptide repeat protein -
  HT135_RS19265 (HT135_19260) - 3756301..3757110 (-) 810 WP_106019695.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12566.36 Da        Isoelectric Point: 9.0096

>NTDB_id=453746 HT135_RS19230 WP_106019692.1 3751856..3752197(-) (ssbB) [Bacillus halotolerans strain KKD1]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCKKGSLVGLSGRIQTR
SYENAEGVKVYVTEVMADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=453746 HT135_RS19230 WP_106019692.1 3751856..3752197(-) (ssbB) [Bacillus halotolerans strain KKD1]
ATGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGGTACACTTCTGCAGGCGCGGCAGTCAC
ACACATTACGATTGCAGTTAACCGCAGCTTCAAAAATGCTTCAGGAGAAATTGAAGCGGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCAAAAAAGGCTCTCTCGTCGGCCTAAGCGGACGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTACGTAACTGAAGTGATGGCTGATACTGTTCGTTTTATGGACCCTAAACC
TCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

92.035

100

0.92
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.208

93.805

0.593
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.222

95.575

0.451
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae D39

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae R6

42.593

95.575

0.407
  ssbB/cilA Streptococcus mitis SK321

42.593

95.575

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

40.952

92.92

0.381