Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   FOC72_RS09040 Genome accession   NZ_CP054570
Coordinates   1895005..1895400 (-) Length   131 a.a.
NCBI ID   WP_002896737.1    Uniprot ID   A0A0B7GMJ4
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1890005..1900400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS09020 (FOC72_09020) - 1890469..1891752 (-) 1284 WP_002896731.1 ABC transporter substrate-binding protein -
  FOC72_RS09025 (FOC72_09025) - 1891749..1892432 (-) 684 WP_002896732.1 response regulator transcription factor -
  FOC72_RS09030 (FOC72_09030) - 1892425..1893738 (-) 1314 WP_002896734.1 sensor histidine kinase -
  FOC72_RS09035 (FOC72_09035) - 1893738..1894724 (-) 987 WP_002896735.1 substrate-binding domain-containing protein -
  FOC72_RS09040 (FOC72_09040) ssbB/cilA 1895005..1895400 (-) 396 WP_002896737.1 single-stranded DNA-binding protein Machinery gene
  FOC72_RS09045 (FOC72_09045) - 1895529..1896116 (+) 588 WP_002896739.1 hypothetical protein -
  FOC72_RS09050 (FOC72_09050) ytpR 1896197..1896823 (-) 627 WP_002896740.1 YtpR family tRNA-binding protein -
  FOC72_RS09055 (FOC72_09055) - 1896820..1897155 (-) 336 WP_002896742.1 thioredoxin family protein -
  FOC72_RS09060 (FOC72_09060) - 1897152..1897439 (-) 288 WP_002896743.1 DUF4651 domain-containing protein -
  FOC72_RS09065 (FOC72_09065) pepA 1897610..1898674 (+) 1065 WP_002896744.1 glutamyl aminopeptidase -
  FOC72_RS09070 (FOC72_09070) - 1898793..1900277 (+) 1485 WP_002896745.1 DUF1846 domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14711.57 Da        Isoelectric Point: 6.7246

>NTDB_id=453514 FOC72_RS09040 WP_002896737.1 1895005..1895400(-) (ssbB/cilA) [Streptococcus sanguinis strain FDAARGOS_770]
MYNKVIVIGRLTATPELHKTANEKSVARATVAVNRRYKSQSGEREADFVNVVVWGRLAETLASYASKGSLISLDGELRTR
RYEKEGATHYVTEVLCHSFQLLESRAQRALRENNSGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=453514 FOC72_RS09040 WP_002896737.1 1895005..1895400(-) (ssbB/cilA) [Streptococcus sanguinis strain FDAARGOS_770]
ATGTATAATAAAGTAATTGTAATCGGCCGGCTGACGGCTACACCTGAACTGCACAAGACTGCGAATGAAAAATCTGTGGC
CCGCGCAACGGTCGCGGTTAATCGCCGTTATAAATCTCAGAGCGGTGAGCGTGAGGCGGATTTTGTAAATGTCGTTGTCT
GGGGTCGTCTAGCTGAGACTTTAGCCAGCTATGCAAGTAAGGGCAGCTTGATTTCTCTGGATGGTGAGCTACGGACTCGT
CGCTATGAGAAGGAGGGGGCGACTCATTATGTGACAGAAGTGCTCTGTCATAGCTTCCAGCTCCTGGAAAGTCGGGCCCA
GCGCGCTCTGCGTGAAAATAATAGCGGAGCTGATTTAGCAGATTTGGTGTTGGAAGAAGAGGAACTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7GMJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae Rx1

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae D39

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae R6

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.206

100

0.832
  ssbB/cilA Streptococcus mitis SK321

82.443

100

0.824
  ssbB/cilA Streptococcus mitis NCTC 12261

81.679

100

0.817
  ssbA Streptococcus mutans UA159

80.916

100

0.809
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366