Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   HT132_RS03300 Genome accession   NZ_CP054479
Coordinates   611435..611776 (+) Length   113 a.a.
NCBI ID   WP_003151249.1    Uniprot ID   A0A9Q3LHX6
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 606435..616776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS03265 (HT132_03265) - 606557..607354 (+) 798 WP_007614310.1 flagellar hook-basal body protein -
  HT132_RS03270 (HT132_03270) - 607379..608200 (+) 822 WP_014419076.1 flagellar hook-basal body protein -
  HT132_RS03275 (HT132_03275) - 608218..609282 (-) 1065 WP_017418759.1 tetratricopeptide repeat protein -
  HT132_RS03280 (HT132_03280) fabZ 609478..609903 (+) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  HT132_RS03285 (HT132_03285) mscL 609960..610355 (+) 396 WP_014419073.1 large conductance mechanosensitive channel protein MscL -
  HT132_RS03290 (HT132_03290) - 610401..610811 (-) 411 WP_007407558.1 YwpF-like family protein -
  HT132_RS03295 (HT132_03295) - 610984..611337 (+) 354 WP_003151247.1 hypothetical protein -
  HT132_RS03300 (HT132_03300) ssbB 611435..611776 (+) 342 WP_003151249.1 single-stranded DNA-binding protein Machinery gene
  HT132_RS03305 (HT132_03305) - 611987..612769 (+) 783 WP_003151250.1 DeoR/GlpR family DNA-binding transcription regulator -
  HT132_RS03310 (HT132_03310) - 612766..613623 (+) 858 WP_095060245.1 Cof-type HAD-IIB family hydrolase -
  HT132_RS03315 (HT132_03315) - 613736..616510 (-) 2775 WP_174532377.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12661.53 Da        Isoelectric Point: 9.5812

>NTDB_id=452751 HT132_RS03300 WP_003151249.1 611435..611776(+) (ssbB) [Bacillus amyloliquefaciens strain R8-25]
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=452751 HT132_RS03300 WP_003151249.1 611435..611776(+) (ssbB) [Bacillus amyloliquefaciens strain R8-25]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGATCCGGAGCTCCGTTTTACATCAGCGGGCATTCCCGTCGC
GCATATTACGCTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.991

100

0.77
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

93.805

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

93.805

0.496
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.903

100

0.469
  ssbA Streptococcus mutans UA159

42.478

100

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.708

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.708

100

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

37.5

99.115

0.372