Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   I5367_RS18860 Genome accession   NZ_CP065539
Coordinates   3843159..3843953 (-) Length   264 a.a.
NCBI ID   WP_007407895.1    Uniprot ID   A7ZAN9
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3838159..3848953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS18840 (I5367_18840) - 3838501..3839508 (-) 1008 WP_023357221.1 ThiF family adenylyltransferase -
  I5367_RS18845 (I5367_18845) - 3839740..3841158 (-) 1419 WP_012118890.1 sensor histidine kinase -
  I5367_RS18850 (I5367_18850) - 3841155..3841364 (-) 210 WP_012118891.1 winged helix-turn-helix domain-containing protein -
  I5367_RS18855 (I5367_18855) htrA 3841876..3843072 (-) 1197 WP_012118892.1 S1C family serine protease Regulator
  I5367_RS18860 (I5367_18860) vicX 3843159..3843953 (-) 795 WP_007407895.1 MBL fold metallo-hydrolase Regulator
  I5367_RS18865 (I5367_18865) - 3843968..3844807 (-) 840 WP_012118893.1 two-component system regulatory protein YycI -
  I5367_RS18870 (I5367_18870) yycH 3844794..3846152 (-) 1359 WP_004393107.1 two-component system activity regulator YycH -
  I5367_RS18875 (I5367_18875) walK 3846142..3847977 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  I5367_RS18880 (I5367_18880) walR 3847984..3848691 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29116.20 Da        Isoelectric Point: 6.0280

>NTDB_id=450067 I5367_RS18860 WP_007407895.1 3843159..3843953(-) (vicX) [Bacillus amyloliquefaciens strain DGL1]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEKIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=450067 I5367_RS18860 WP_007407895.1 3843159..3843953(-) (vicX) [Bacillus amyloliquefaciens strain DGL1]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAAAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTTCCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTCTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCACTGATGACGGACACCGGGTATGTGAGCGACAGAATGAAAGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGATGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCCAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGTGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZAN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527