Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | FOC77_RS21480 | Genome accession | NZ_CP053989 |
| Coordinates | 4335585..4335926 (-) | Length | 113 a.a. |
| NCBI ID | WP_047943656.1 | Uniprot ID | A0A0J1L5M7 |
| Organism | Niallia circulans strain FDAARGOS_783 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4330585..4340926
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOC77_RS21465 (FOC77_21465) | - | 4333948..4334694 (-) | 747 | WP_047943657.1 | WecB/TagA/CpsF family glycosyltransferase | - |
| FOC77_RS21470 (FOC77_21470) | - | 4335048..4335197 (+) | 150 | WP_082810023.1 | anti-repressor SinI family protein | - |
| FOC77_RS21475 (FOC77_21475) | - | 4335424..4335570 (-) | 147 | WP_156485403.1 | hypothetical protein | - |
| FOC77_RS21480 (FOC77_21480) | ssbB | 4335585..4335926 (-) | 342 | WP_047943656.1 | single-stranded DNA-binding protein | Machinery gene |
| FOC77_RS21485 (FOC77_21485) | - | 4336193..4337929 (-) | 1737 | WP_047943655.1 | phospho-sugar mutase | - |
| FOC77_RS21490 (FOC77_21490) | - | 4338095..4338601 (-) | 507 | WP_061797958.1 | cupin domain-containing protein | - |
| FOC77_RS21495 (FOC77_21495) | - | 4338837..4340519 (+) | 1683 | WP_061797964.1 | methyl-accepting chemotaxis protein | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12929.65 Da Isoelectric Point: 8.4729
>NTDB_id=449811 FOC77_RS21480 WP_047943656.1 4335585..4335926(-) (ssbB) [Niallia circulans strain FDAARGOS_783]
MINQVTLVGRLTKDPELRVTQEGTSIVHVTVAINRNYKNQAGDYDADFVQCTFWNKVAENTAQYCHKGSLVGVVGRIQTR
NYENQDRKKVYVTEVIAESVRFLDPRKLEQTIP
MINQVTLVGRLTKDPELRVTQEGTSIVHVTVAINRNYKNQAGDYDADFVQCTFWNKVAENTAQYCHKGSLVGVVGRIQTR
NYENQDRKKVYVTEVIAESVRFLDPRKLEQTIP
Nucleotide
Download Length: 342 bp
>NTDB_id=449811 FOC77_RS21480 WP_047943656.1 4335585..4335926(-) (ssbB) [Niallia circulans strain FDAARGOS_783]
ATGATCAATCAAGTTACTTTAGTAGGAAGGCTAACGAAAGATCCAGAACTGCGAGTAACGCAAGAAGGAACTTCCATTGT
TCATGTGACTGTTGCAATAAATAGAAACTACAAGAATCAAGCTGGTGATTACGATGCTGATTTTGTGCAATGTACCTTTT
GGAATAAGGTAGCGGAAAATACAGCCCAGTATTGTCATAAAGGCTCTCTGGTTGGAGTCGTTGGCCGAATACAAACAAGA
AACTATGAAAATCAGGATCGGAAAAAGGTCTATGTAACAGAAGTTATTGCCGAATCCGTACGTTTCTTAGATCCTAGAAA
ACTAGAACAAACCATTCCTTAA
ATGATCAATCAAGTTACTTTAGTAGGAAGGCTAACGAAAGATCCAGAACTGCGAGTAACGCAAGAAGGAACTTCCATTGT
TCATGTGACTGTTGCAATAAATAGAAACTACAAGAATCAAGCTGGTGATTACGATGCTGATTTTGTGCAATGTACCTTTT
GGAATAAGGTAGCGGAAAATACAGCCCAGTATTGTCATAAAGGCTCTCTGGTTGGAGTCGTTGGCCGAATACAAACAAGA
AACTATGAAAATCAGGATCGGAAAAAGGTCTATGTAACAGAAGTTATTGCCGAATCCGTACGTTTCTTAGATCCTAGAAA
ACTAGAACAAACCATTCCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.727 |
97.345 |
0.611 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
93.805 |
0.54 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.83 |
93.805 |
0.496 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
47.17 |
93.805 |
0.442 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.396 |
93.805 |
0.407 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.396 |
93.805 |
0.407 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.453 |
93.805 |
0.398 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.453 |
93.805 |
0.398 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.453 |
93.805 |
0.398 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.453 |
93.805 |
0.398 |
| ssbA | Streptococcus mutans UA159 |
42.453 |
93.805 |
0.398 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.857 |
92.92 |
0.398 |