Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FOC89_RS12355 Genome accession   NZ_CP053980
Coordinates   1752656..1754005 (-) Length   449 a.a.
NCBI ID   WP_000879417.1    Uniprot ID   A0AAE9TF02
Organism   Bacillus thuringiensis strain FDAARGOS_795     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1747656..1759005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC89_RS12335 (FOC89_12330) secA 1747977..1750484 (-) 2508 WP_000579378.1 preprotein translocase subunit SecA -
  FOC89_RS12340 (FOC89_12335) raiA 1750761..1751303 (-) 543 WP_000671195.1 ribosome-associated translation inhibitor RaiA -
  FOC89_RS12345 (FOC89_12340) cspC 1751628..1751825 (-) 198 WP_001990088.1 cold shock protein CspC -
  FOC89_RS12350 (FOC89_12345) comFC 1751952..1752656 (-) 705 WP_003162242.1 comF operon protein ComFC -
  FOC89_RS12355 (FOC89_12350) comFA 1752656..1754005 (-) 1350 WP_000879417.1 ATP-dependent helicase ComFA Machinery gene
  FOC89_RS12360 (FOC89_12355) - 1754133..1755443 (-) 1311 WP_000734329.1 NlpC/P60 family protein -
  FOC89_RS12365 (FOC89_12360) - 1755696..1756010 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  FOC89_RS12370 (FOC89_12365) - 1756184..1757026 (-) 843 WP_000844769.1 DegV family protein -
  FOC89_RS12375 (FOC89_12370) - 1757266..1757901 (+) 636 WP_000926685.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51233.89 Da        Isoelectric Point: 9.5047

>NTDB_id=449613 FOC89_RS12355 WP_000879417.1 1752656..1754005(-) (comFA) [Bacillus thuringiensis strain FDAARGOS_795]
MLAGKQLLLEELPSDLRRELSDLKKEGEVICVQGVIKKASKYICQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIHERKGERELHSLQWKGSLSLGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELVPRLQEVFPSINVAALYGGSVDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRTGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYVNKKYPIFL
FVPHVRYIEEIGLLLKGLDHRIDGVHAEDPMRKEKVEAFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHYGKTESMVRAKRHIQSMNKSAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=449613 FOC89_RS12355 WP_000879417.1 1752656..1754005(-) (comFA) [Bacillus thuringiensis strain FDAARGOS_795]
ATGCTCGCTGGAAAGCAGTTACTATTAGAAGAACTCCCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGGAGGG
AGAGGTCATATGTGTACAAGGCGTAATAAAGAAGGCTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCAGTAAAGTATGTACGTATTGCCGGAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGCGGGATTCATGAAAGAAAAGGAGAAAGGGAATTACATTCGTTACAGTGGAAAGGGAGTTT
GTCTCTTGGTCAGGAGCTGGCGGCGCAAGGTGTTATAGAAGCTATTAAGCAAAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCACTTCAAAAAGGAGAAAGAGTGTGTATCGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGTACCGAGATTACAAGAAGTGTTTCCAAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCGTGAAAAAGATGCAGCGTTAGTCGTTGCAACGACGCATCAATTGTTACGTTATTATAGAGCGTTTC
ATGTAATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAGCAAGCGATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGCAATTTCAGAACGGGGAAACAAAA
AGGTATCATTGTCTCTGGACGATACCATCGTCATCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGTGTGTTACTACAATGGTTAAAAATGTACGTAAACAAAAAATACCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAGGCCTGTTATTGAAAGGGTTGGATCATAGAATCGATGGCGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTGGAAGCGTTTCGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGGGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGGGCTGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCGTATGGTGAGGTTGTTTATTTTCATTACGGTAAGACAGAGTC
GATGGTACGTGCGAAAAGACATATTCAAAGTATGAACAAAAGTGCGAAAGAACAAGGATTAATTGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(108-254)

Helicase conserved C-terminal domain (Helicase_C)

(312-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.914

93.096

0.483
  comFA Latilactobacillus sakei subsp. sakei 23K

40.704

88.641

0.361