Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   G4D73_RS11125 Genome accession   NZ_CP053947
Coordinates   2390694..2392829 (+) Length   711 a.a.
NCBI ID   WP_416232266.1    Uniprot ID   -
Organism   Acinetobacter sp. WY4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2385694..2397829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D73_RS11105 pilM 2387689..2388747 (+) 1059 WP_004644949.1 pilus assembly protein PilM Machinery gene
  G4D73_RS11110 comN 2388747..2389385 (+) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  G4D73_RS11115 comO 2389382..2390104 (+) 723 WP_213686773.1 type 4a pilus biogenesis protein PilO Machinery gene
  G4D73_RS11120 pilP 2390104..2390631 (+) 528 WP_004732447.1 pilus assembly protein PilP Machinery gene
  G4D73_RS11125 pilQ 2390694..2392829 (+) 2136 WP_416232266.1 type IV pilus secretin PilQ Machinery gene
  G4D73_RS11130 aroK 2392866..2393402 (+) 537 WP_213686775.1 shikimate kinase AroK -
  G4D73_RS11135 aroB 2393431..2394510 (+) 1080 WP_213686776.1 3-dehydroquinate synthase -
  G4D73_RS11140 - 2394521..2395399 (+) 879 WP_213686777.1 hypothetical protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 77346.49 Da        Isoelectric Point: 5.0698

>NTDB_id=449313 G4D73_RS11125 WP_416232266.1 2390694..2392829(+) (pilQ) [Acinetobacter sp. WY4]
MNRVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQLPGQGTEIRVMFNGLPPQPQAYQLESPSRLILDFDKAQQNLKQSSI
PVATREASSVDVTSDAQRARLTVNLADAGAFTTRVEGNTFILKINSATPVVMAQPVQQQIAQGISNIGFQRGAQGEGQVV
IDLAGNNTPVDVQQQGTKVIVRTLGSKIPSHLTRRLNVTDFATPVSSVDAVNQNGSGVITIQSAESYEYMAYQTDNKLTI
SLKRPETKSPLRPKTVAYSGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVPWDQALDIVLKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIKQSVALAPIQTEYMQLSYAKAADIEKLITQNKSAQNSTNSSNSSSNTTNSEDK
ESLLSSRGSVSVDARTNTIIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGILSQGVTNNNHLL
VGGSDTTLWDLRTPELDEELGGWKYEIQRPDNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKV
LTADKQKATVASGSQIPYQSAEGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTPTGQLTINKNQI
NTNVLVDNGETVVLGGIFEQETRNAQTKVPFLGDIPYVGRLFRKDLKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=449313 G4D73_RS11125 WP_416232266.1 2390694..2392829(+) (pilQ) [Acinetobacter sp. WY4]
ATGAATCGTGTGTTTCGTCAGTTTTCAATGGGTGCTGTTGCGATTGCGGTGATGCAAGCGGCCAGTGCACAGGTTTCAAT
GACTAATGTAGTACCCATGCAGCTTCCTGGGCAAGGAACTGAGATTCGGGTGATGTTCAATGGTTTACCACCACAACCAC
AAGCCTACCAATTAGAATCACCGTCACGTTTGATTTTAGACTTTGACAAAGCCCAACAGAATTTAAAACAAAGCAGTATC
CCGGTCGCAACACGTGAAGCCAGTTCAGTGGATGTTACTTCGGATGCGCAGCGCGCTCGTCTGACGGTTAATCTGGCGGA
TGCAGGTGCCTTTACGACACGCGTGGAAGGCAATACTTTTATTCTTAAGATTAACTCGGCAACTCCTGTTGTAATGGCTC
AACCTGTGCAACAACAAATCGCTCAGGGGATCAGTAATATTGGTTTTCAGCGCGGTGCGCAAGGTGAAGGCCAAGTGGTG
ATTGATCTGGCAGGCAATAATACACCGGTTGATGTACAGCAGCAGGGTACCAAAGTCATTGTGCGGACTTTAGGTTCCAA
GATTCCTTCTCATTTGACTCGCCGTCTTAATGTGACTGATTTCGCAACGCCTGTATCGAGTGTGGATGCCGTGAATCAAA
ATGGCTCAGGCGTGATTACCATCCAGTCTGCGGAAAGCTATGAATATATGGCTTACCAGACGGATAACAAGCTGACCATC
AGTTTGAAACGTCCGGAAACCAAGAGCCCATTACGTCCTAAAACCGTTGCTTATTCGGGTAAGAAAATTTCTTTGGATTT
CCAAGATATCGAAGTCCGTCGTGTCTTACAGCTCTTAGCTGATTTCACCGATATTAATATGGTGGCAGCAGACAGTGTAC
AAGGCAATATTACCTTGCGCTTAAAAGAAGTGCCGTGGGATCAGGCCCTGGATATTGTACTTAAAACCAAAAACTTGGAT
AAACGTCGTAATGGTAATGTGATCTGGATTGCACCAGTTGCAGAGCTGATTAAGGCTGAAGAGGAAGAAGCTAAGGCTAT
TAAGCAAAGTGTTGCGCTTGCGCCTATCCAAACTGAATATATGCAGCTGAGTTATGCCAAAGCTGCTGATATTGAAAAAT
TGATTACGCAGAATAAATCTGCACAAAACTCAACTAACTCGTCAAATAGTTCCTCTAATACTACGAATAGTGAAGATAAA
GAAAGTTTATTAAGTTCGCGTGGTTCTGTGTCTGTTGATGCACGAACTAATACCATTATTGTGAATGATACTCAGCCTTT
TATCGATAAAATCCGCAATATGGTGGACTTACTCGATGTGCAGGTGAAACAGGTTATGGTTGAAGCGCGTATTGTGCGGG
CAACGACTGATTTTACCAAAGAGATGGGAGTAAAATGGGGGATTCTATCGCAAGGGGTTACAAATAATAATCATCTTCTT
GTCGGTGGCAGCGATACAACCTTATGGGATTTAAGAACCCCTGAGTTGGATGAAGAGTTGGGTGGATGGAAGTATGAAAT
CCAAAGACCGGATAATCTTAATGTAGACTTAGGGGTTACCAGTCCAGGTGCCAGCCGTATTGCATTTGGTTTAATCAGCC
TTTCTGATTTTATGCTGGATCTTGAGCTTTCTGCACTTCAGGCAGATGGCTATGGTGAAGTGATTTCTACACCTAAAGTG
CTGACAGCGGACAAGCAAAAAGCGACTGTTGCCTCTGGTTCACAAATTCCGTACCAGTCAGCAGAAGGTGGTGGTGCGAA
TGCAGTGTCCACTACTGAGTTTATTGATGCTACCTTAAGTCTGGATGTCACACCAAGCATTACGCCAGATGGCAAAGTAC
AGATGGAACTTAATATTACCAGTGACTCACCGGGTAATCCGACACCGACTGGACAGCTCACTATTAATAAAAACCAGATC
AATACCAATGTCTTGGTCGATAATGGTGAAACAGTCGTCCTAGGTGGTATTTTTGAGCAGGAAACCCGTAATGCGCAAAC
CAAGGTACCATTCTTGGGGGATATCCCTTATGTAGGACGTTTATTCCGTAAAGATTTAAAGTCGGATAATAAACGTGAGC
TACTGATTTTCGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-120)

Secretin and TonB N terminus short domain (STN)

(290-332)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-444)

Bacterial type II and III secretion system protein (Secretin)

(545-703)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.451

100

0.762
  pilQ Acinetobacter baumannii strain A118

74.313

100

0.761
  comQ Acinetobacter baylyi ADP1

70.263

100

0.714
  pilQ Pseudomonas aeruginosa PAK

41.571

98.453

0.409
  pilQ Legionella pneumophila strain Lp02

37.36

100

0.374
  pilQ Legionella pneumophila strain ERS1305867

37.394

99.297

0.371