Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   G4D73_RS11115 Genome accession   NZ_CP053947
Coordinates   2389382..2390104 (+) Length   240 a.a.
NCBI ID   WP_213686773.1    Uniprot ID   -
Organism   Acinetobacter sp. WY4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2384382..2395104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D73_RS11100 ponA 2384998..2387523 (-) 2526 WP_213686772.1 penicillin-binding protein PBP1a -
  G4D73_RS11105 pilM 2387689..2388747 (+) 1059 WP_004644949.1 pilus assembly protein PilM Machinery gene
  G4D73_RS11110 comN 2388747..2389385 (+) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  G4D73_RS11115 comO 2389382..2390104 (+) 723 WP_213686773.1 type 4a pilus biogenesis protein PilO Machinery gene
  G4D73_RS11120 pilP 2390104..2390631 (+) 528 WP_004732447.1 pilus assembly protein PilP Machinery gene
  G4D73_RS11125 pilQ 2390694..2392829 (+) 2136 WP_416232266.1 type IV pilus secretin PilQ Machinery gene
  G4D73_RS11130 aroK 2392866..2393402 (+) 537 WP_213686775.1 shikimate kinase AroK -
  G4D73_RS11135 aroB 2393431..2394510 (+) 1080 WP_213686776.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27231.74 Da        Isoelectric Point: 4.6173

>NTDB_id=449311 G4D73_RS11115 WP_213686773.1 2389382..2390104(+) (comO) [Acinetobacter sp. WY4]
MSNEEFDEFSQDVVAVPKNKMTVEKFFQQFNTLDPNNYGSWPLSVKITCWIFIAALAFAVIYFVMIRSTIESISQASTHE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEIKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTITGTENKEKKSEIPVIDYVVKAKTYRYVGNAEGAAAQPEANSTTQGAQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=449311 G4D73_RS11115 WP_213686773.1 2389382..2390104(+) (comO) [Acinetobacter sp. WY4]
ATGAGTAATGAAGAATTCGATGAGTTCAGCCAGGATGTCGTCGCTGTACCCAAAAATAAAATGACTGTTGAAAAGTTTTT
TCAGCAATTCAATACATTGGATCCAAACAATTATGGTAGTTGGCCTTTATCGGTCAAAATTACCTGCTGGATTTTTATTG
CCGCGCTGGCATTTGCGGTGATTTACTTCGTTATGATCAGAAGCACGATTGAGTCAATTTCACAAGCCAGTACCCATGAA
CAAAACCTGCTGAATGAATTCCGTGAAAAAGAATCCAAATTACGCAACTTACAACAATATCAAATCCAGCTTCAGGAAAT
GGAAGCCCGTTTTAACCAGCAGTTAGAACAGTTACCGAAAGAAACTGAGATTCCGGGTCTGGTTGAAGATATTAACCTGA
GCGGTGTGAATTCAGGCCTGAAGTTTAAAAATATTCGCCTAGAGCCTGAAATTAAACAAGAGTTCTTTATTGAACAGCCG
ATTGCAATTGAAGCGACTGGGGATTATCACGCTTTTGGCTCTTTTGTCAGCAGTATTGCCGGCTTGTCGCGTATTGTAAC
GCTGCATGATTTCACCATTACCGGTACTGAAAATAAAGAGAAAAAATCTGAAATTCCAGTCATTGATTATGTGGTAAAAG
CCAAAACTTACCGTTATGTCGGTAATGCTGAAGGTGCTGCAGCACAGCCTGAAGCTAATAGCACTACTCAGGGGGCGCAG
TAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

66.667

98.75

0.658
  pilO Acinetobacter baumannii D1279779

66.109

99.583

0.658