Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HPY08_RS00175 Genome accession   NZ_CP053808
Coordinates   38643..39758 (+) Length   371 a.a.
NCBI ID   WP_114762599.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP7G     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 33643..44758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY08_RS00155 (HPY08_00155) rsmB 34566..35846 (-) 1281 WP_069647580.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  HPY08_RS00160 (HPY08_00160) fmt 35902..36849 (-) 948 WP_000083526.1 methionyl-tRNA formyltransferase -
  HPY08_RS00165 (HPY08_00165) def 36867..37376 (-) 510 WP_000115010.1 peptide deformylase -
  HPY08_RS00170 (HPY08_00170) - 37516..38643 (+) 1128 WP_162810069.1 LysM peptidoglycan-binding domain-containing protein -
  HPY08_RS00175 (HPY08_00175) dprA 38643..39758 (+) 1116 WP_114762599.1 DNA-processing protein DprA Machinery gene
  HPY08_RS00180 (HPY08_00180) - 39761..40237 (+) 477 WP_000979769.1 DUF494 family protein -
  HPY08_RS00185 (HPY08_00185) - 40251..40817 (+) 567 WP_162810068.1 type I DNA topoisomerase -
  HPY08_RS00190 (HPY08_00190) - 40879..42012 (-) 1134 WP_175242436.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  HPY08_RS00195 (HPY08_00195) purE 42016..42501 (-) 486 WP_175242437.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  HPY08_RS00200 (HPY08_00200) - 42668..43225 (+) 558 WP_001934452.1 L-threonylcarbamoyladenylate synthase -
  HPY08_RS00205 (HPY08_00205) hemF 43244..44161 (+) 918 WP_000443983.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39977.93 Da        Isoelectric Point: 6.9625

>NTDB_id=447634 HPY08_RS00175 WP_114762599.1 38643..39758(+) (dprA) [Vibrio cholerae strain SP7G]
MKDQDLAAWLALCFTPKLSSKTISHLLATRLPAQLQSFTPKEWLASGLKPEQLVFLTTQAAKQAELCLQWRSAANNRYIV
TPHCPLYPRLLKEISSSPPILFIEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATDLAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQVPYQATLFSAVQGDEELPFPEL
LANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=447634 HPY08_RS00175 WP_114762599.1 38643..39758(+) (dprA) [Vibrio cholerae strain SP7G]
ATGAAAGATCAGGATTTAGCGGCATGGTTGGCACTCTGTTTTACTCCTAAACTAAGCAGCAAAACCATTTCTCACCTGCT
TGCGACCCGTTTGCCAGCCCAGTTGCAAAGTTTTACGCCTAAGGAATGGTTGGCCAGCGGGCTTAAGCCCGAACAACTGG
TGTTTTTAACCACTCAAGCGGCTAAGCAAGCCGAGCTGTGTTTGCAATGGCGATCAGCAGCCAATAACCGCTATATCGTC
ACTCCTCATTGCCCGCTTTACCCTCGTTTATTGAAAGAGATTAGCTCATCGCCTCCCATCCTGTTTATCGAAGGAATATG
GGAAGCGGTGCATGACCCTGCGGTGGCTATCGTCGGTAGCCGCAATGCCAGTGTTGATGGGCGGCAGATCGCTCGCCAGT
TTGCCACTGACCTCGCGCAGTCGGGTTTAGTGGTCACCAGTGGTTTAGCGCTTGGTATTGATGGCTATGCGCACGATGGA
GCTTTGCAAGCACAAGGGCAAACCGTGGCAGTATTAGGCTCAGGGCTGGCGCAGGTTTACCCCAAACAGCATCAAGGGTT
AGCGGAGCGAATCATCGCCCAAGGGGCCTTGGTTTCTGAGTTTGCCCCTCACACACCTCCTAAAGCCGATCACTTTCCGC
GCCGTAACCGAATTATCAGCGGCTTATCGCTGGGCGTTGTGGTGGTAGAAGCTGCGGAGAAAAGCGGCTCACTCATCACT
GCGCGCTACGCCGCTGAGCAAGGGCGTGAGGTCTTTGTGGTTCCCGGCTCGATTTTTAATGCCGCCAGCCAAGGTAGCAA
TCAATTGATTCGCCAAGGCGCTTGTTTGGTGCAAAGTGTGCAACAAATTCATCAAGAGCTCAAAAATGCGCTGACTTGGT
CACTCTCTGAACAAGTTCCTTATCAAGCAACACTTTTTTCTGCTGTACAGGGCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAATAGAAGCTACACCTATTGATATTCTCGCAAGCCGGACCCAGATACCGGTGCAAGATATCATGAT
GCAGCTCTTGGAGCTTGAGCTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

97.844

100

0.978
  dprA Vibrio campbellii strain DS40M4

57.838

99.73

0.577
  dprA Glaesserella parasuis strain SC1401

42.819

100

0.434
  dprA Legionella pneumophila strain ERS1305867

46.154

87.601

0.404
  dprA Neisseria meningitidis strain C311

37.594

100

0.404
  dprA Neisseria meningitidis MC58

37.594

100

0.404
  dprA Neisseria gonorrhoeae strain FA1090

36.776

100

0.394
  dprA Acinetobacter baumannii D1279779

43.505

89.218

0.388
  dprA Acinetobacter baumannii strain A118

43.202

89.218

0.385
  dprA Neisseria gonorrhoeae MS11

35.949

100

0.383
  dprA Acinetobacter baylyi ADP1

41.916

90.027

0.377
  dprA Haemophilus influenzae Rd KW20

48.029

75.202

0.361