Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HPY07_RS01320 Genome accession   NZ_CP053806
Coordinates   280779..282494 (+) Length   571 a.a.
NCBI ID   WP_175241823.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP6G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275779..287494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY07_RS01300 (HPY07_01300) pilM 278072..279088 (+) 1017 WP_175241822.1 type IV pilus biogenesis protein PilM Machinery gene
  HPY07_RS01305 (HPY07_01305) pilN 279078..279662 (+) 585 WP_000902745.1 PilN domain-containing protein Machinery gene
  HPY07_RS01310 (HPY07_01310) pilO 279655..280245 (+) 591 WP_000157688.1 type 4a pilus biogenesis protein PilO Machinery gene
  HPY07_RS01315 (HPY07_01315) pilP 280235..280753 (+) 519 WP_032472751.1 pilus assembly protein PilP Machinery gene
  HPY07_RS01320 (HPY07_01320) pilQ 280779..282494 (+) 1716 WP_175241823.1 type IV pilus secretin PilQ Machinery gene
  HPY07_RS01325 (HPY07_01325) aroK 282681..283205 (+) 525 WP_000818616.1 shikimate kinase AroK -
  HPY07_RS01330 (HPY07_01330) aroB 283233..284318 (+) 1086 WP_162810456.1 3-dehydroquinate synthase -
  HPY07_RS01335 (HPY07_01335) - 284373..285848 (+) 1476 WP_175241824.1 AAA family ATPase -
  HPY07_RS01340 (HPY07_01340) - 285918..286751 (+) 834 WP_000744680.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 62356.44 Da        Isoelectric Point: 4.5760

>NTDB_id=447593 HPY07_RS01320 WP_175241823.1 280779..282494(+) (pilQ) [Vibrio cholerae strain SP6G]
MKNGLKTYVAQTWLTLWVGLALCASSMVFSAESATANQLENIDFRVNKEKAAVLIVELASPSAVVDVQKVQEGLSIELLK
TDVADDKLYLLDVKDFSTPVDSVEVFRKEPSTQLVVTVDGEFQHDYTLKGKYLEVVISKLKADEKPKPKSVLEKEGKLIS
INFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQAL
EKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNISVIREIIESLDIPVKQ
VQIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVNLASTSANASSIAFQVAKLG
SGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVAFKKAVLSLKVTPQITPDNRLVLDL
SVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL
LIFVTPKVVIQ

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=447593 HPY07_RS01320 WP_175241823.1 280779..282494(+) (pilQ) [Vibrio cholerae strain SP6G]
ATGAAAAATGGATTGAAAACTTATGTCGCACAGACTTGGCTGACCTTGTGGGTTGGTTTGGCACTTTGTGCTTCTTCCAT
GGTGTTTAGTGCTGAATCCGCTACCGCCAACCAGTTGGAAAACATCGACTTTCGGGTCAACAAAGAGAAGGCGGCGGTCT
TAATTGTCGAATTGGCTTCGCCATCGGCGGTCGTGGATGTGCAAAAAGTCCAAGAAGGGTTGAGCATTGAACTCCTGAAA
ACCGATGTGGCGGATGACAAGCTGTATCTGCTTGATGTGAAAGATTTTTCGACCCCTGTTGATAGCGTGGAAGTATTCCG
TAAAGAGCCAAGCACACAACTGGTTGTGACTGTCGATGGGGAGTTTCAGCACGATTATACCTTGAAAGGAAAATACCTTG
AGGTCGTGATCAGTAAACTCAAAGCTGATGAAAAGCCTAAGCCCAAGAGTGTCTTGGAAAAAGAAGGCAAGCTTATCTCA
ATTAACTTCCAAGATATTCCGGTGCGTAACGTCCTGCAGCTGATTGCCGATTATAACGGTTTCAACTTAGTGGTTTCCGA
TTCTGTGGTGGGTAACCTGACTTTACGCTTGGATGGCGTGCCTTGGCAGCAAGTGTTGGACATTATTCTGCAAGTCAAAG
GGCTCGATAAGCGGGTCGATGGCAATGTGATTTTGATTGCGCCGAAAGAGGAACTCGACTTGCGCGAGAAACAAGCGCTC
GAAAAAGCCCGTTTAGCAGAAGAGTTGGGCGATTTAAAATCAGAAATCATCAAGATTAACTTTGCCAAAGCGTCTGACAT
TGCGGCGATGATCGGCGGTGAAGGCAACGTTAACATGTTGTCTGAACGAGGTTCGATCAGCATCGACGAACGAACTAACT
CGCTATTGATCCGAGAGCTGCCCGATAATATTTCTGTGATCCGCGAGATCATTGAATCGCTGGATATTCCGGTCAAACAA
GTCCAAATCGAAGCGCGGATTGTCACCGTCAAAGAAGGTAACTTGGATGAGCTGGGGGTGCGCTGGGGCGTGATGTCAAC
CAATGGTAGCCATTCAGTAGGCGGGACCATTGAGAGTAACTTGTGGCAACAAGGGTTACTGGCGGAAGATGAATTTCCGG
TGGATGAATTCTTAAATGTAAATTTGGCTTCCACCTCTGCCAATGCGTCTTCGATTGCTTTCCAAGTTGCTAAATTGGGC
TCTGGAACGTTGTTGGATTTGGAGCTTTCAGCATTACAAAATGAATCGAAGGCCGAAATCATCTCTAGCCCTCGTTTGAT
TACCACCAATAAACAGCCTGCCTATATTGAGCAAGGTACTGAGATCCCTTATCTGGAATCGTCTTCCAGTGGTGCCTCTA
CGGTCGCGTTTAAAAAAGCGGTATTGAGCTTGAAGGTGACACCACAAATCACCCCCGATAACCGCTTGGTGCTCGACTTG
AGTGTGACCCAAGACCGACGCGGTGAAACGGTGAAAACCGGTACGGGTGAAGCGGTTTCTATTGATACTCAGCGTATTGG
CACTCAAGTGTTGGTGAATAACGGAGAAACTGTGGTGTTGGGTGGCATTTTCCAACACAGCATCAATAATTCGGTAGATA
AGGTGCCACTGCTGGGGGACTTGCCTGTTTTGGGCGCGTTATTCAGACGAACCTATGAGCAAATGGGCAAAAGTGAACTG
CTGATTTTTGTCACGCCGAAAGTGGTCATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(411-569)

Bacterial type II/III secretion system short domain (Secretin_N)

(255-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

98.949

100

0.989
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

98.949

100

0.989
  pilQ Vibrio campbellii strain DS40M4

78.364

96.322

0.755
  pilQ Legionella pneumophila strain ERS1305867

42.963

94.571

0.406
  pilQ Legionella pneumophila strain Lp02

42.963

94.571

0.406
  comQ Acinetobacter baylyi ADP1

39.161

100

0.392
  pilQ Acinetobacter baumannii D1279779

37.819

100

0.389
  pilQ Acinetobacter baumannii strain A118

37.819

100

0.389
  pilQ Pseudomonas aeruginosa PAK

39.493

96.673

0.382