Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HPY07_RS01305 Genome accession   NZ_CP053806
Coordinates   279078..279662 (+) Length   194 a.a.
NCBI ID   WP_000902745.1    Uniprot ID   A0A0H6BVQ2
Organism   Vibrio cholerae strain SP6G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 274078..284662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY07_RS01290 (HPY07_01290) oxyR 274483..275376 (+) 894 WP_175241820.1 DNA-binding transcriptional regulator OxyR -
  HPY07_RS01295 (HPY07_01295) - 275452..277929 (-) 2478 WP_175241821.1 penicillin-binding protein 1A -
  HPY07_RS01300 (HPY07_01300) pilM 278072..279088 (+) 1017 WP_175241822.1 type IV pilus biogenesis protein PilM Machinery gene
  HPY07_RS01305 (HPY07_01305) pilN 279078..279662 (+) 585 WP_000902745.1 PilN domain-containing protein Machinery gene
  HPY07_RS01310 (HPY07_01310) pilO 279655..280245 (+) 591 WP_000157688.1 type 4a pilus biogenesis protein PilO Machinery gene
  HPY07_RS01315 (HPY07_01315) pilP 280235..280753 (+) 519 WP_032472751.1 pilus assembly protein PilP Machinery gene
  HPY07_RS01320 (HPY07_01320) pilQ 280779..282494 (+) 1716 WP_175241823.1 type IV pilus secretin PilQ Machinery gene
  HPY07_RS01325 (HPY07_01325) aroK 282681..283205 (+) 525 WP_000818616.1 shikimate kinase AroK -
  HPY07_RS01330 (HPY07_01330) aroB 283233..284318 (+) 1086 WP_162810456.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21964.42 Da        Isoelectric Point: 9.9503

>NTDB_id=447590 HPY07_RS01305 WP_000902745.1 279078..279662(+) (pilN) [Vibrio cholerae strain SP6G]
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQAGGAHNG

Nucleotide


Download         Length: 585 bp        

>NTDB_id=447590 HPY07_RS01305 WP_000902745.1 279078..279662(+) (pilN) [Vibrio cholerae strain SP6G]
ATGTTGCATAAGGTTAATTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATTTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACTGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACTCCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H6BVQ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

100

100

1
  pilN Vibrio campbellii strain DS40M4

60.452

91.237

0.552