Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HPY07_RS01315 Genome accession   NZ_CP053806
Coordinates   280235..280753 (+) Length   172 a.a.
NCBI ID   WP_032472751.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP6G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275235..285753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY07_RS01295 (HPY07_01295) - 275452..277929 (-) 2478 WP_175241821.1 penicillin-binding protein 1A -
  HPY07_RS01300 (HPY07_01300) pilM 278072..279088 (+) 1017 WP_175241822.1 type IV pilus biogenesis protein PilM Machinery gene
  HPY07_RS01305 (HPY07_01305) pilN 279078..279662 (+) 585 WP_000902745.1 PilN domain-containing protein Machinery gene
  HPY07_RS01310 (HPY07_01310) pilO 279655..280245 (+) 591 WP_000157688.1 type 4a pilus biogenesis protein PilO Machinery gene
  HPY07_RS01315 (HPY07_01315) pilP 280235..280753 (+) 519 WP_032472751.1 pilus assembly protein PilP Machinery gene
  HPY07_RS01320 (HPY07_01320) pilQ 280779..282494 (+) 1716 WP_175241823.1 type IV pilus secretin PilQ Machinery gene
  HPY07_RS01325 (HPY07_01325) aroK 282681..283205 (+) 525 WP_000818616.1 shikimate kinase AroK -
  HPY07_RS01330 (HPY07_01330) aroB 283233..284318 (+) 1086 WP_162810456.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19112.31 Da        Isoelectric Point: 10.0857

>NTDB_id=447592 HPY07_RS01315 WP_032472751.1 280235..280753(+) (pilP) [Vibrio cholerae strain SP6G]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEVTPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=447592 HPY07_RS01315 WP_032472751.1 280235..280753(+) (pilP) [Vibrio cholerae strain SP6G]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAACCCATTTTAGAGTTTGAAGTCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATTAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

99.419

100

0.994
  pilP Vibrio campbellii strain DS40M4

56.977

100

0.57