Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HPY13_RS00175 Genome accession   NZ_CP053796
Coordinates   38650..39765 (+) Length   371 a.a.
NCBI ID   WP_000654788.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL4G     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 33650..44765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS00155 (HPY13_00155) rsmB 34573..35853 (-) 1281 WP_094392965.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  HPY13_RS00160 (HPY13_00160) fmt 35909..36856 (-) 948 WP_000083538.1 methionyl-tRNA formyltransferase -
  HPY13_RS00165 (HPY13_00165) def 36874..37383 (-) 510 WP_000115010.1 peptide deformylase -
  HPY13_RS00170 (HPY13_00170) - 37523..38650 (+) 1128 WP_175249693.1 LysM peptidoglycan-binding domain-containing protein -
  HPY13_RS00175 (HPY13_00175) dprA 38650..39765 (+) 1116 WP_000654788.1 DNA-processing protein DprA Machinery gene
  HPY13_RS00180 (HPY13_00180) - 39768..40244 (+) 477 WP_000979769.1 DUF494 family protein -
  HPY13_RS00185 (HPY13_00185) - 40258..40824 (+) 567 WP_057563006.1 type I DNA topoisomerase -
  HPY13_RS00190 (HPY13_00190) - 40897..42030 (-) 1134 WP_032471376.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  HPY13_RS00195 (HPY13_00195) purE 42034..42519 (-) 486 WP_057563007.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  HPY13_RS00200 (HPY13_00200) - 42686..43243 (+) 558 WP_002022527.1 L-threonylcarbamoyladenylate synthase -
  HPY13_RS00205 (HPY13_00205) hemF 43262..44179 (+) 918 WP_000443979.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39989.00 Da        Isoelectric Point: 7.1952

>NTDB_id=447351 HPY13_RS00175 WP_000654788.1 38650..39765(+) (dprA) [Vibrio cholerae strain SL4G]
MKDQDLVAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLASGLKPEQLVFLTTQAAKQAELCLQWRSAANNRYIV
TPHCPLYPRLLKEISSSPPILFIEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQVPYQATLFSAVQGDEELPFPEL
LANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=447351 HPY13_RS00175 WP_000654788.1 38650..39765(+) (dprA) [Vibrio cholerae strain SL4G]
ATGAAAGATCAGGATTTAGTGGCATGGTTGGCGCTCTGTTTTACTCCTAAACTAGGCAGCAAAACCATTTCTCACCTGCT
TGCGACCCGTTTGCCAGCCCAGTTGCAAAGTTTTACGCCTAAGCAATGGTTGGCCAGCGGGCTTAAGCCCGAACAACTGG
TGTTTTTAACTACTCAAGCGGCTAAACAAGCCGAGCTGTGTTTGCAATGGCGATCAGCAGCCAATAACCGCTATATCGTC
ACTCCTCATTGCCCGCTTTACCCTCGTTTATTGAAAGAGATTAGCTCATCGCCTCCCATCCTGTTTATTGAAGGAATATG
GGAAGCGGTGCATGACCCCGCGGTAGCTATCGTCGGTAGCCGCAATGCCAGTGTTGATGGGCGGCAGATCGCTCGCCAAT
TTGCCACTGAGCTCGCGCAGTCGGGTTTAGTGGTCACCAGTGGTTTAGCGCTTGGTATTGATGGCTATGCGCACGATGGA
GCTTTGCAAGCACAAGGGCAAACCGTGGCAGTATTAGGTTCAGGGCTGGCGCAGGTTTACCCCAAACAGCATCAAGGGTT
AGCGGAGCGAATCATCGCCCAAGGGGCCTTGGTTTCTGAGTTTGCCCCTCACACACCTCCTAAAGCCGATCACTTTCCGC
GCCGTAACCGAATTATCAGCGGCTTATCGCTGGGCGTTGTGGTGGTAGAAGCTGCGGAGAAAAGCGGCTCACTCATCACT
GCGCGCTATGCCGCTGAGCAAGGGCGTGAGGTCTTTGTGGTTCCCGGCTCGATTTTTAATGCCGCCAGCCAAGGTAGCAA
TCAATTGATTCGTCAAGGCGCTTGTTTGGTGCAAAGTGTGCAACAAATTCATCAAGAGCTCAAAAATGCGCTGACTTGGT
CACTCTCTGAACAAGTTCCTTATCAAGCAACACTTTTTTCTGCTGTACAGGGCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAATAGAAGCTACACCTATTGATATTCTCGCAAGCCGGACCCAGATACCGGTGCAAGATATCATGAT
GCAGCTCTTGGAGCTTGAGCTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

98.383

100

0.984
  dprA Vibrio campbellii strain DS40M4

57.838

99.73

0.577
  dprA Legionella pneumophila strain ERS1305867

43.583

100

0.439
  dprA Glaesserella parasuis strain SC1401

43.351

100

0.439
  dprA Neisseria meningitidis MC58

37.594

100

0.404
  dprA Neisseria meningitidis strain C311

37.594

100

0.404
  dprA Neisseria gonorrhoeae strain FA1090

36.776

100

0.394
  dprA Acinetobacter baumannii D1279779

43.505

89.218

0.388
  dprA Acinetobacter baumannii strain A118

43.202

89.218

0.385
  dprA Neisseria gonorrhoeae MS11

35.949

100

0.383
  dprA Acinetobacter baylyi ADP1

42.042

89.757

0.377
  dprA Haemophilus influenzae Rd KW20

48.746

75.202

0.367